Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E14
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.19 
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    28   1.3  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   1.7  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   4.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   5.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   5.3  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    26   5.3  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   5.3  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   7.0  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.3  

>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 376 LKFTQNSQFFRHMTSNHEVQQKSATFECNDCQSVVQLKS 492
           L+F +         +N   +  S  FECN C S+ +LKS
Sbjct: 5   LRFFKQGAILHENNTNFTERSSSVFFECNPCYSIEKLKS 43


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 325 PEEHDEKQYIYTCQYCKLKFTQNSQFFRH 411
           P+E  E   +Y C +C   +    QF RH
Sbjct: 203 PKEFSEVDIVYICSFCFCYYGSERQFQRH 231


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 337 DEKQYIYTCQYCKLKFTQNSQFFRHMTSNHEVQQKSATFECNDC 468
           + K Y    + CK  FT++S   +H++  HE    +  F C+ C
Sbjct: 232 ERKTYHCPMEGCKKSFTRSSALKKHISVIHE---GNMAFHCDSC 272



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 552 CESCSITFKSRYGLRRHMXLKQTLAE 629
           C  C   FK+   LR H+ L QT  E
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLE 231


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 361 CQYCKLKFTQNSQFFRHMTSNHE 429
           C++C   F  + + F+H    HE
Sbjct: 247 CEFCNTHFYDDDELFKHCREKHE 269


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 268 NKKPRSGPRIRITRARPRKPEEHDEKQYIYT 360
           N+K +S P++ IT   P+   +H      YT
Sbjct: 47  NRKSKSKPKVTITSDTPKVSSQHSPVSSAYT 77


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 385 TQNSQFFRHMTSNHEVQ--QKSATFECNDCQSVVQLKSTGLGLWHLSN*SSGGKANQDAK 558
           +Q S+    ++S +E+Q    +A  + +    +   KS+G+ L  LSN  S  K      
Sbjct: 215 SQRSEPDSRLSSMNEMQLLASAAANQLDAAPRITPTKSSGVNLMPLSNAPSPPKQMNVVG 274

Query: 559 AVPSHSN 579
           ++PS SN
Sbjct: 275 SLPSSSN 281


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 483 LNHALAVVTLERGRFLLDLVIRSHMTKELTVLSEFKLTILTGVNVL 346
           LNH +A   L++G F+       ++ KE  +L    L +LT + V+
Sbjct: 66  LNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELGVM 111


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +1

Query: 424 HEVQQKSATFECNDCQSVVQLKSTGLGLWHLSN*SSGGKA---NQDAKAVPSHSNRGMVS 594
           HE++ +   F  ND + V       L +W+    +   K      D K V  H ++G+++
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLA 222

Query: 595 GG 600
            G
Sbjct: 223 SG 224


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 586 YLDLNVMEQLSHLDLLFHLMISLTSAKVPNLCFLIEPRFGSRYT 455
           Y   N+ + +SH D++  L   ++S +VP++ F   P  G   T
Sbjct: 29  YRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTST 72


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 340 EKQYIYTCQYCKLKFTQNSQFFRHMTSNHE 429
           EK +I +   C   FT++    +HM + HE
Sbjct: 103 EKPFICSVPECDRSFTRSDALAKHMRTVHE 132


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 355 YTCQYCKLKFTQNSQFFRHMTSNHEVQQKSA 447
           + C +C   FT++    RH+   H V+Q  A
Sbjct: 47  FICPHCSSSFTRSDVLNRHVNQKH-VKQNDA 76


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 124  F*KPFHRLKLSIFNN*TLLPTC 189
            F  P HRL L+ +N+ TLL  C
Sbjct: 1069 FWSPDHRLTLTAYNHQTLLSIC 1090


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 319 RKPEEHDEKQYIYTCQYCKLKFTQNSQFFRHMTSNHEVQQ 438
           R+ E   E    ++C +C   F ++    RH+   H  +Q
Sbjct: 44  RRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQ 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,004
Number of Sequences: 5004
Number of extensions: 44353
Number of successful extensions: 138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)