Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_E14
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 31 0.78
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 31 1.0
02_01_0613 - 4594749-4595333 30 1.8
10_08_0543 - 18649894-18650233,18651446-18651981 29 2.4
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 29 3.1
08_02_0498 - 17815189-17815249,17815852-17815938,17816532-178165... 28 5.5
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 28 5.5
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 28 5.5
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158... 28 7.2
09_03_0153 - 12814596-12815645 28 7.2
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435... 28 7.2
11_04_0142 + 14027726-14029081 27 9.6
04_04_0340 + 24517562-24520318 27 9.6
01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519 27 9.6
>03_02_0061 +
5342338-5342401,5343025-5343131,5343962-5344009,
5344297-5344399,5345152-5345234,5345271-5346089,
5346189-5346338,5346420-5346797
Length = 583
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 622 KVCFSXICRLRPYLDLNVMEQLSHLDLLFHLMISLTSAKVPNLC 491
K C+ IC P L +++LSHL++ M+ K PNLC
Sbjct: 315 KYCYGIICLKIPCL----LQRLSHLEVFECRMLQAIENKAPNLC 354
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 352 IYTCQYCKLKFTQNSQFFRHMTSNHEVQQKSATFECNDCQ 471
+Y+C+ C +K T H+T ++Q++ C C+
Sbjct: 268 LYSCKVCSVKCTFERMLAYHLTGKKHLKQENLQLSCEICK 307
>02_01_0613 - 4594749-4595333
Length = 194
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 283 SGPRIRITRARPRKPEEHD-----EKQYIYTCQYCKLKFTQNSQFFRHMTSN 423
+ PR+ + P K EE D E + ++ C YC+ +F + H ++
Sbjct: 51 TAPRLLVVSPAPAKEEERDGDDDGEPRQLFACHYCRREFYSSQALGGHQNAH 102
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 320 RGRARVILILGPLRGFLFIIKGKFNDTSQMIYIFFALKNV 201
RG V GP+ G + KGK +S + IFFA KN+
Sbjct: 38 RGGGVVRCSAGPVSGGMISKKGKICSSSSRVGIFFAWKNL 77
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 355 YTCQYCKLKFTQNSQFFRHMTSNHEVQQK 441
Y CQ C L F S + H+ + H+V K
Sbjct: 312 YECQQCNLTFHGQSAYAHHLITFHKVSSK 340
>08_02_0498 -
17815189-17815249,17815852-17815938,17816532-17816587,
17816625-17816721,17817085-17817152
Length = 122
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 491 AQVWDFGTCQTNHQVEKQIKMRKLFHHIQIEVWSQ 595
+ VW + C +H + +I ++ + +I VWSQ
Sbjct: 75 SSVWIYSVCTVSHPQDLEISQQQQYLQPRIGVWSQ 109
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 355 YTCQYCKLKFTQNSQFFRHMTSNHEVQ--QKSATFECNDCQS 474
Y+C C FT RH+ H Q Q S C C S
Sbjct: 497 YSCAVCMDSFTNRRVLERHVQEKHGAQYLQYSTLLRCISCNS 538
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 361 CQYCKLKFTQNSQFFRHMTSNHEVQQKSATFECNDCQ 471
C++CK F +++ + HMT H F C+ CQ
Sbjct: 147 CEFCKSPFYGDNELYTHMTREH--------FSCHICQ 175
>11_05_0079 +
18914668-18914753,18915123-18915338,18915829-18915895,
18916656-18916723,18916999-18917125,18918240-18918339,
18918405-18918433,18918678-18918730,18919246-18919732
Length = 410
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 514 LSN*SSGGKANQDAKAVPSHSNRG 585
L N S+ GKAN D KAV ++N G
Sbjct: 381 LKNSSTNGKANVDDKAVSENTNSG 404
>09_03_0153 - 12814596-12815645
Length = 349
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 532 LMISLTSAKVPNLCFLIEPRFGSRYTRTWPISVG 431
+++ +T++ P FL++PR GSR P+ G
Sbjct: 67 VLVLMTTSSPPASAFLLDPRDGSRVAELPPLGEG 100
>09_03_0032 +
11742279-11742398,11743318-11743359,11743394-11743555,
11743768-11743888,11744104-11744195,11744271-11744371,
11744592-11744949
Length = 331
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 219 KYINHLRSIVKFALYNEQKTPQWSEN 296
KY+NHL S+ +F L +Q T EN
Sbjct: 40 KYLNHLSSLSRFPLQIDQSTVAIKEN 65
>11_04_0142 + 14027726-14029081
Length = 451
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 540 SKSRCESCSITFKSRYGLRRHMXLKQT 620
SK RC C + +K+ + L HM QT
Sbjct: 277 SKHRCRECGMEWKTGFALGGHMRKHQT 303
>04_04_0340 + 24517562-24520318
Length = 918
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +1
Query: 397 QFFRHM----TSNHEVQQKSATFECNDCQSVVQLKSTGLGLW 510
+F +HM T+ H+ +K E ++C+++ S G GLW
Sbjct: 864 RFLKHMNYSWTALHDSFRKLDVLEAHECENLQPWPSCGKGLW 905
>01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519
Length = 236
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 376 LKFTQNSQFFRHMTSNHEVQQKSATFECNDCQS 474
L+ ++QFF TS+H + C DCQ+
Sbjct: 10 LELLLSTQFFNTCTSHHNSPRNECNLFCIDCQA 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,536
Number of Sequences: 37544
Number of extensions: 256600
Number of successful extensions: 578
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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