Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E14
         (642 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    27   0.38 
AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosoma...    25   2.0  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 0.38
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 355 YTCQYCKLKFTQNSQFFRHMTSNHEVQQKSATFECNDCQSVVQLKS 492
           Y+C  C  +FTQ++    H    H+V  K   F+C  C +    K+
Sbjct: 268 YSCDVCFARFTQSNSLKAHKMI-HQVGNK-PVFQCKLCPTTCGRKT 311



 Score = 26.2 bits (55), Expect = 0.88
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 YTCQYCKLKFTQNSQFFRHMTSNHEVQQKSATFECN 462
           + C++C   FT + +  RH+   H  ++     EC+
Sbjct: 183 HRCKHCDNCFTTSGELIRHIRYRHTHERPHKCTECD 218



 Score = 25.8 bits (54), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 549 RCESCSITFKSRYGLRRHM 605
           +C+ C+ TF+ +  L+RHM
Sbjct: 384 KCDQCAQTFRQKQLLKRHM 402



 Score = 23.4 bits (48), Expect = 6.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 549 RCESCSITFKSRYGLRRH 602
           +C+ C  TF  RY  + H
Sbjct: 328 KCKRCDSTFPDRYSYKMH 345


>AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosomal
           protein protein.
          Length = 56

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 379 KFTQNSQFFRHMTSNHEVQQKSATFECNDC 468
           K+ Q S+F+R  ++NH + +K     C  C
Sbjct: 13  KYGQGSRFWRACSNNHGMIRKYGLNICRQC 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,064
Number of Sequences: 2352
Number of extensions: 11662
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)