Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_E13
(562 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 164 1e-39
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 137 2e-31
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 113 4e-24
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 99 8e-20
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 93 4e-18
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 91 1e-17
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 85 1e-15
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 83 6e-15
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 77 2e-13
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 76 5e-13
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 75 2e-12
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 71 1e-11
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 70 3e-11
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 64 3e-09
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 63 5e-09
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 62 7e-09
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 61 2e-08
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 50 5e-05
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 47 3e-04
UniRef50_Q5CV36 Cluster: VPS13p like protein involved in vacuola... 38 0.21
UniRef50_Q9KCH7 Cluster: BH1594 protein; n=1; Bacillus haloduran... 37 0.28
UniRef50_A2QIX2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.28
UniRef50_Q1JPW6 Cluster: Ell2 protein; n=9; Danio rerio|Rep: Ell... 36 0.85
UniRef50_A6PT22 Cluster: Putative uncharacterized protein; n=1; ... 34 2.0
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 34 2.6
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 33 4.6
UniRef50_Q73L82 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q1JZW1 Cluster: Cobalbumin biosynthesis enzyme; n=1; De... 33 6.0
UniRef50_Q4QJ51 Cluster: Putative uncharacterized protein; n=3; ... 33 6.0
UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=... 32 8.0
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 164 bits (399), Expect = 1e-39
Identities = 88/131 (67%), Positives = 100/131 (76%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
PTW+KLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILRI+K+ GLAP
Sbjct: 23 PTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAP 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQGPPIPVESCCIHDSPA*LVIYKD*ELCSLLTGK 458
DLPEDLY+LI+KAVA+RK LERNRKD+ + I L Y + K
Sbjct: 83 DLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRL--ILIESRIHRLARYYKTKRVLPPNWK 140
Query: 459 YESSTASALVA 491
YESSTASALVA
Sbjct: 141 YESSTASALVA 151
Score = 46.0 bits (104), Expect = 6e-04
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 34 MGRMHAPGKGISQSALAYRRSV 99
MGRMHAPGKG+SQSAL YRRSV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSV 22
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 137 bits (331), Expect = 2e-31
Identities = 80/134 (59%), Positives = 95/134 (70%), Gaps = 3/134 (2%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P+W+K T DV E I K KKGLTPSQIGV+LRDSHG+ QV+ VTG KILRI+KA GLAP
Sbjct: 23 PSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAP 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQGPP---IPVESCCIHDSPA*LVIYKD*ELCSLL 449
++PEDLY+LI+KAVA+RK LERNRKD+ I VES IH YK + +
Sbjct: 83 EIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES-RIHRLAR---YYKKTKKLPPV 138
Query: 450 TGKYESSTASALVA 491
KYES+TAS LVA
Sbjct: 139 -WKYESTTASTLVA 151
Score = 36.7 bits (81), Expect = 0.37
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 34 MGRMHAPGKGISQSALAYRRS 96
MGRMH+ GKGIS SAL Y+RS
Sbjct: 1 MGRMHSRGKGISASALPYKRS 21
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 113 bits (271), Expect = 4e-24
Identities = 67/134 (50%), Positives = 89/134 (66%), Gaps = 3/134 (2%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P W+K+ + +V + + K +KG+ PSQIG+ LRDS G+AQV+ VTG+KILRI+K GLAP
Sbjct: 23 PAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGIAQVKNVTGRKILRILKHNGLAP 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQGPP---IPVESCCIHDSPA*LVIYKD*ELCSLL 449
++PEDLY+L+++A MRK LER+ D+ I VES IH L Y
Sbjct: 83 EIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVES-RIHR----LARYYKRVKQLPP 137
Query: 450 TGKYESSTASALVA 491
T KYESSTASA+VA
Sbjct: 138 TWKYESSTASAMVA 151
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 98.7 bits (235), Expect = 8e-20
Identities = 44/87 (50%), Positives = 64/87 (73%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P WVK + + + E I L KKGL PSQIG LRDS G+ V+ + G+ I++I+K GL P
Sbjct: 20 PLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAGRNIVKILKKNGLNP 79
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQ 359
++PEDL++LI+KA+ ++K LERN+KD+
Sbjct: 80 EIPEDLFFLIKKAINIKKHLERNKKDK 106
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 93.1 bits (221), Expect = 4e-18
Identities = 42/91 (46%), Positives = 65/91 (71%)
Frame = +3
Query: 84 VPPQCPTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKA 263
V + P WV+ T + V++ + +L KKG +QIG++LRD++G+ V+ +TGKKI +IMK
Sbjct: 18 VRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKE 77
Query: 264 MGLAPDLPEDLYYLIQKAVAMRKPLERNRKD 356
GL P +PEDL L+++AV +RK LE++ KD
Sbjct: 78 HGLYPKVPEDLLNLMRRAVNLRKHLEQHPKD 108
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 91.5 bits (217), Expect = 1e-17
Identities = 62/129 (48%), Positives = 76/129 (58%)
Frame = +3
Query: 105 WVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 284
W+K T+DD+KEQI+KL KKGLTPSQIGV LRD+H GLA DL
Sbjct: 25 WLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTH--------------------GLALDL 64
Query: 285 PEDLYYLIQKAVAMRKPLERNRKDQGPPIPVESCCIHDSPA*LVIYKD*ELCSLLTGKYE 464
P DLY+LI+KAVA++K LERNRKD+ + P L Y + + KYE
Sbjct: 65 PGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTESRIHP--LARYCKTKRMLPPSWKYE 122
Query: 465 SSTASALVA 491
S +ASALVA
Sbjct: 123 SPSASALVA 131
Score = 35.1 bits (77), Expect = 1.1
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 34 MGRMHAPGKGISQSALAYRRSVLPG*N*PLMMLRNRSSNLAKRVLLLPK 180
MG MHAP K +SQS L Y SV LM L++ S ++ +++ L K
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSV-------LMWLKSTSDDMKEQIYKLAK 42
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 84.6 bits (200), Expect = 1e-15
Identities = 38/90 (42%), Positives = 59/90 (65%)
Frame = +3
Query: 90 PQCPTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMG 269
P+ P+W++ +V++ I K K+GL PSQIG LRD H + R +TGK + +IM+ G
Sbjct: 20 PKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTRPITGKSVTQIMEEHG 78
Query: 270 LAPDLPEDLYYLIQKAVAMRKPLERNRKDQ 359
P+LPEDL ++QKAV +++ L N+ D+
Sbjct: 79 ATPELPEDLNNIVQKAVGLQRHLRANKGDR 108
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 82.6 bits (195), Expect = 6e-15
Identities = 38/87 (43%), Positives = 61/87 (70%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P WV ++ ++V++++ +L +G PS IG++LRD +G+ V+ VTGKKI +I+K G+
Sbjct: 23 PEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGIPSVKQVTGKKIQKILKEHGVEI 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQ 359
PEDL LI+KA+ +R LE +RKD+
Sbjct: 83 KYPEDLKALIKKALKLRAHLEVHRKDK 109
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 77.4 bits (182), Expect = 2e-13
Identities = 32/89 (35%), Positives = 58/89 (65%)
Frame = +3
Query: 93 QCPTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGL 272
+ P+W+ + +++E + K K GLTPSQIG+ LRD H + ++ +T K I I++ L
Sbjct: 21 RAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTIGEILEENDL 80
Query: 273 APDLPEDLYYLIQKAVAMRKPLERNRKDQ 359
++PEDL +++KAV +++ L+ N+ D+
Sbjct: 81 KAEMPEDLENIVKKAVGLQRHLKENKGDR 109
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 76.2 bits (179), Expect = 5e-13
Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Frame = +3
Query: 75 GAGVPPQC--PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVT----- 233
G+ PP+ P W++ T +D++ + KL K+G + + IG +LRD +G+ V+
Sbjct: 13 GSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNP 72
Query: 234 GKK--ILRIMKAMGLAPDLPEDLYYLIQKAVAMRKPLERNRKD 356
+K I RI++ GLAP++PEDL +LI++AV +RK LE++ KD
Sbjct: 73 NRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKD 115
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 74.5 bits (175), Expect = 2e-12
Identities = 32/86 (37%), Positives = 53/86 (61%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P W + V+ +I +L K+G +P+ IG++LRD +G+ VR GK + ++ GL P
Sbjct: 25 PEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLP 84
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKD 356
D+P DL YL+++A + K +E N +D
Sbjct: 85 DIPWDLIYLLKRAYRVYKHIELNPRD 110
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 71.3 bits (167), Expect = 1e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
PTW+ + D++K + ++G KG+ IG LRD +G+ + V G+ I R ++ G+ P
Sbjct: 23 PTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKASDVLGESITRFLQRNGVVP 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKD 356
+P DL L+ +A +R L RKD
Sbjct: 83 KIPHDLESLVHRANTLRSHLNIYRKD 108
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 70.1 bits (164), Expect = 3e-11
Identities = 32/86 (37%), Positives = 52/86 (60%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P+W++ + D++KE I K+ K+G+T S IG+ LRD + + R V K+ +++K L
Sbjct: 23 PSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKLGQVLKENNLES 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKD 356
D+PEDL LI++ K L N+ D
Sbjct: 83 DVPEDLQALIERYKRAMKHLSLNKHD 108
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 63.7 bits (148), Expect = 3e-09
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDS--HG--VAQVRFVTGKKILRIMKAM 266
P W + D ++ ++ +L ++G +PS+IG+ LRD G + V TGKK+ I++
Sbjct: 23 PEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEEN 82
Query: 267 GLAPDLPEDLYYLIQKAVAMRKPLERNRKD 356
PDLPEDL L+++AV +R ++ N D
Sbjct: 83 EAEPDLPEDLRNLLERAVRLRDHMDENPGD 112
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 62.9 bits (146), Expect = 5e-09
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +3
Query: 93 QCPTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGL 272
+ P W A +++ I + K G++ +QIG +LRD H V VR V GK+I ++
Sbjct: 21 EAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAVPNVRLVLGKRIGAVLSENDE 80
Query: 273 APDLPEDLYYLIQKAVAMRKPLERNRKD 356
+ PEDL L+++AVA+ + L N +D
Sbjct: 81 SGTYPEDLMNLMRQAVAIIEHLTTNSRD 108
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 62.5 bits (145), Expect = 7e-09
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRD 200
PTW+KLT+D+VKEQI+KL KKGLTP QIGV+LRD
Sbjct: 236 PTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
Score = 36.7 bits (81), Expect = 0.37
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 25 AANMGRMHAPGKGISQSALAYRRSV 99
AA GR+H PGKG+S+SAL Y SV
Sbjct: 211 AAITGRIHVPGKGLSRSALLYHHSV 235
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +3
Query: 105 WVKLTADDVKEQIFKLGKKG-LTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPD 281
W LT+ ++ + I L K L PS+IG++LRD V R ++G I +I++ GL P
Sbjct: 25 WKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKLVVDTRNISGMNISKILRLKGLVPL 84
Query: 282 LPEDLYYLIQKAVAMRKPLERNRKD 356
+PEDL+YLI+KA ++ L + D
Sbjct: 85 VPEDLFYLIKKANKIKAHLSDFKHD 109
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 49.6 bits (113), Expect = 5e-05
Identities = 21/30 (70%), Positives = 28/30 (93%)
Frame = +3
Query: 270 LAPDLPEDLYYLIQKAVAMRKPLERNRKDQ 359
L P++PEDLY+LI+KAVA+RK LER+RKD+
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDK 98
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 46.8 bits (106), Expect = 3e-04
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 25 AANMGRMHAPGKGISQSALAYRRSVL 102
+A +GRMHAPGKG+SQSAL YRRSVL
Sbjct: 441 SAIVGRMHAPGKGLSQSALPYRRSVL 466
>UniRef50_Q5CV36 Cluster: VPS13p like protein involved in vacuolar
sorting; n=3; cellular organisms|Rep: VPS13p like protein
involved in vacuolar sorting - Cryptosporidium parvum
Iowa II
Length = 4420
Score = 37.5 bits (83), Expect = 0.21
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = -3
Query: 425 LVNNELSRGIVDATRFNRNWRSLVLPITFQ-RFPHGDSLLDQVVQIFR*IRSKTHSFHDT 249
+++N +S+GI A + NR+ + + PIT Q +PH L D ++ + + + SK
Sbjct: 2190 IIHNIISKGIEAALKTNRSLKLISQPITLQIHYPHVLDLYDVLLSMQKSL-SKRSQLSRN 2248
Query: 248 QDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNII 123
DL+ S + + + +G SK AK E+L +N+I
Sbjct: 2249 SDLYRSLTNGISERFTSSQEFLGIGSSK---AK-EELSINVI 2286
>UniRef50_Q9KCH7 Cluster: BH1594 protein; n=1; Bacillus
halodurans|Rep: BH1594 protein - Bacillus halodurans
Length = 140
Score = 37.1 bits (82), Expect = 0.28
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -3
Query: 458 LSSKEGAQLLVLVNNELSRGIVDATRFNRNWRSLV 354
+S ++G + +VL+ NE+ +GIV R +R WR LV
Sbjct: 80 ISWEKGGKTVVLIGNEIGKGIVPVKREDREWRDLV 114
>UniRef50_A2QIX2 Cluster: Putative uncharacterized protein; n=1;
Aspergillus niger|Rep: Putative uncharacterized protein
- Aspergillus niger
Length = 159
Score = 37.1 bits (82), Expect = 0.28
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = -2
Query: 402 GNRGCNKIQPELAVPGPSYYVPKVSSWRQPSGSGSTNLPVDQEQDP 265
GNR C ++ ELA PG SY PKVS +PS SG L + DP
Sbjct: 49 GNRQCGRL--ELATPGQSYPRPKVSHPTEPS-SGQDGLGEEGNTDP 91
>UniRef50_Q1JPW6 Cluster: Ell2 protein; n=9; Danio rerio|Rep: Ell2
protein - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 675
Score = 35.5 bits (78), Expect = 0.85
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = -2
Query: 405 PGNRGCNKIQPELAVPGPSYYVPKV--SSWRQPS---GSGSTNLPVDQ 277
P K P +A PGPS+++P V SS PS G GS +LP+DQ
Sbjct: 359 PSETEDKKPAPTVACPGPSFHLPPVTGSSSNSPSTPEGRGSQDLPLDQ 406
>UniRef50_A6PT22 Cluster: Putative uncharacterized protein; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Putative
uncharacterized protein - Victivallis vadensis ATCC
BAA-548
Length = 221
Score = 34.3 bits (75), Expect = 2.0
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 195 RDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIQKAVAMRKPLERNRKDQGPPIP 374
RD G+AQ RF+T ++ I + LPE+L ++ V P R+ P+P
Sbjct: 117 RDQRGLAQARFLTEQEREGIRVFHTMPDSLPEELPGPVEYRVGFFLPFSLFRRTNHAPVP 176
Query: 375 VESCCIH 395
V+ H
Sbjct: 177 VKGTVWH 183
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 33.9 bits (74), Expect = 2.6
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +3
Query: 102 TWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPD 281
T +++T D K + + K G+ GV+ R +HG A++R T K +LR K L P
Sbjct: 154 TELRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR-RKDDQLPPS 211
Query: 282 LPED 293
+ ED
Sbjct: 212 IRED 215
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 33.1 bits (72), Expect = 4.6
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVR 224
PTW+K T D + +++ +L K+GL +M+ D+ G AQ +
Sbjct: 59 PTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_Q73L82 Cluster: Putative uncharacterized protein; n=1;
Treponema denticola|Rep: Putative uncharacterized
protein - Treponema denticola
Length = 987
Score = 32.7 bits (71), Expect = 6.0
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 316 LSP*GNLWNVIGRTRDRQFRLNLVASTIPRLSSLFTRTKSCAP 444
+SP L + GR +++F LNL A T P+LSS T K+ P
Sbjct: 145 ISPEITLTSTDGRPFNKKFSLNLKADTAPKLSSSITIGKTANP 187
>UniRef50_Q1JZW1 Cluster: Cobalbumin biosynthesis enzyme; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Cobalbumin
biosynthesis enzyme - Desulfuromonas acetoxidans DSM 684
Length = 180
Score = 32.7 bits (71), Expect = 6.0
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -3
Query: 455 SSKEGAQLLVLVNNELSRGIVDATRFNRNWRSLV 354
++++G + ++ V+NEL GIV A +R++R LV
Sbjct: 121 AARQGERTVIFVSNELGMGIVPAETLSRHYRDLV 154
>UniRef50_Q4QJ51 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 854
Score = 32.7 bits (71), Expect = 6.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 390 CNKIQPELAVPGPSYYVPKVSSW 322
C++ P++ +P PS Y+P +SSW
Sbjct: 324 CDRASPQIPLPDPSRYLPPLSSW 346
>UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=1;
Azoarcus sp. EbN1|Rep: Helicase/SNF2 family domain
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 883
Score = 32.3 bits (70), Expect = 8.0
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 135 EQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVT-GKKILRIMKAMGLAPDLPEDLYYLI 308
+++ +L + G T S V LR+ H V + + +K+ IM A+G A D PEDL L+
Sbjct: 563 QRVGRLNRYGQTQSVEVVSLRNPHTVESMIWEKLEEKLGNIMLALGSAMDEPEDLLQLV 621
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,879,687
Number of Sequences: 1657284
Number of extensions: 14103696
Number of successful extensions: 36710
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 35460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36698
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -