Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E13
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   139   3e-34
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   1.9  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   4.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   7.6  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  139 bits (336), Expect = 3e-34
 Identities = 76/131 (58%), Positives = 90/131 (68%)
 Frame = +3

Query: 99  PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
           P W K  AD V EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG+KI+RI+KA GLAP
Sbjct: 23  PAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMRILKANGLAP 82

Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQGPPIPVESCCIHDSPA*LVIYKD*ELCSLLTGK 458
           +LPEDLY LI+KAV++RK LERNRKD+     +    I      L  Y         T K
Sbjct: 83  ELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRL--ILIESRIHRLARYYRKVGALPPTWK 140

Query: 459 YESSTASALVA 491
           YES+TASALVA
Sbjct: 141 YESATASALVA 151



 Score = 34.3 bits (75), Expect = 0.012
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +1

Query: 34 MGRMHAPGKGISQSALAYRRS 96
          MGRMH+ GKGI+ SAL Y RS
Sbjct: 1  MGRMHSKGKGIASSALPYVRS 21


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 366 AVPGPSYYVPKVSSWRQPSGSGSTNLPVDQEQ 271
           A P PSY+ P  S   Q   +GST L  D +Q
Sbjct: 336 APPAPSYFSPGSSFGAQLCANGSTLLRADTKQ 367


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 15  IIKSRQYGSYARTWQGYIPVGAGVPPQCPTWVKLTADDVKEQI 143
           +IK RQ      T    + V +  PPQ P W K   D  K+++
Sbjct: 120 VIKHRQGSPVDNTPTRILNVESLFPPQLPDWEKAFHDIPKKEV 162


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 441  STTLSPCK*RAKPGNRGCNKIQPELAVPGPSYYVPKVSSWRQPSGSGSTNLPVDQEQDP 265
            +TT+S    RAKPGN   N I       G    + ++S  +    SG+ +L   Q   P
Sbjct: 1697 TTTISTA--RAKPGNNDINTILRRNNSRGRRRMLQQMSPLKSNKFSGTNDLNFQQATKP 1753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,270
Number of Sequences: 5004
Number of extensions: 56185
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)