Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_E13
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 126 9e-30
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 118 2e-27
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 112 2e-25
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 93 1e-19
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 29 1.9
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 29 2.5
02_04_0238 + 21186072-21186883,21187315-21189346 29 3.4
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 3.4
06_02_0233 + 13315579-13316046 28 4.4
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 28 5.9
10_07_0166 - 13746208-13746326,13746461-13746532,13746925-137471... 27 7.7
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961... 27 7.7
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 126 bits (305), Expect = 9e-30
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P+WVK A DV+E I K KKG PSQIGV+LRD HG+ V+ VTG KILRI+KA GLAP
Sbjct: 23 PSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAP 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQ 359
++PEDLY+LI+KAVA+RK LERNRKD+
Sbjct: 83 EIPEDLYFLIKKAVAIRKHLERNRKDK 109
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 34 MGRMHAPGKGISQSALAYRRS 96
MGRMH+ GKGIS SA+ Y+R+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRT 21
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 352 RTRDRQFRLNLVASTIPRLSSLFTRTKSCAPS 447
+ +D +FRL LV S I RL+ + RTK P+
Sbjct: 107 KDKDSKFRLILVESRIHRLARYYKRTKKLPPT 138
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 118 bits (285), Expect = 2e-27
Identities = 54/87 (62%), Positives = 70/87 (80%)
Frame = +3
Query: 99 PTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 278
P WVK +A +V+E I ++ KKG PSQIG +LRD+H V + VTG KILR++K+ GLAP
Sbjct: 23 PAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAVPLAQGVTGGKILRVLKSRGLAP 82
Query: 279 DLPEDLYYLIQKAVAMRKPLERNRKDQ 359
++PEDLY+LI+KAVAMRK LERNRKD+
Sbjct: 83 EVPEDLYFLIKKAVAMRKHLERNRKDK 109
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 34 MGRMHAPGKGISQSALAYRRS 96
MGRMH+ GKG+S S L YRR+
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRA 21
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 112 bits (270), Expect = 2e-25
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +3
Query: 129 VKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLI 308
V+E I K KKG PSQIGV+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+LI
Sbjct: 72 VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 131
Query: 309 QKAVAMRKPLERNRKDQ 359
+KAVA+RK LERNRKD+
Sbjct: 132 KKAVAIRKHLERNRKDK 148
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 352 RTRDRQFRLNLVASTIPRLSSLFTRTKSCAPS 447
+ +D +FRL LV S I RL+ + RTK P+
Sbjct: 146 KDKDSKFRLILVESRIHRLARYYKRTKKLPPT 177
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 93.1 bits (221), Expect = 1e-19
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = +3
Query: 126 DVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 305
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+L
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148
Query: 306 IQKAVAMRKPLERNRKDQ 359
I+KAVA+RK LERNRKD+
Sbjct: 149 IKKAVAIRKHLERNRKDK 166
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 352 RTRDRQFRLNLVASTIPRLSSLFTRTKSCAPSL 450
+ +D FRL LV S I RL + RTK P+L
Sbjct: 164 KDKDSSFRLILVESRIHRLVRYYKRTKKLPPTL 196
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 108 PR*DTAAVRQRRLGYTLARCVHTTHI 31
P TAA RQ+ + YT C HT+H+
Sbjct: 89 PEESTAAGRQKPVLYTFINCCHTSHL 114
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 298 YKSSGRSGARPIAFMIRRIFLPVTNLTCA 212
Y GR G RP+A M+ R V N TCA
Sbjct: 400 YNVPGRDGYRPVARMLARHDGAVLNFTCA 428
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 172 GVRPFLPSLKICSLTSSAVSFTQVGHCGGTPAPTGIYPCQVRAYDPYWRL 23
G+ P LP+L S A SF+ GHC P+ T +V D W+L
Sbjct: 542 GMVPMLPTL------SHARSFSIFGHCNKMPSLTEFKVLRVLEMDDCWKL 585
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +3
Query: 75 GAGVPPQCPTWVKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRI 254
GAG+ P+W+ V + G G PS IG L G V ILR+
Sbjct: 438 GAGIVGTIPSWIANLTSLVLLRFSNCGLSGPIPSSIGNRLTVVDGDVNSSHVNNMDILRL 497
Query: 255 MKA-MGLAPD 281
M PD
Sbjct: 498 ASCNMSKFPD 507
>06_02_0233 + 13315579-13316046
Length = 155
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 137 TDLQTWQKGSYSFPNRCHAQGLSWCCTSQICYW*KDPAYHESYGSCS*STGRFVLPDPEG 316
++L +KG +G W +C+W P Y E++ S + S GR P P G
Sbjct: 16 SELDDGEKGREDGEMAAGMEGQQW-----LCWWRPSPRYGEAWQSRTASRGRGRRPHPAG 70
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = -3
Query: 350 PITFQRFPHGDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGR 171
P +FQ +G D IF H H+T TS K++LC T+ V L
Sbjct: 749 PASFQLRHNGSCFSDIFYDIFSAWEKNDH--HETYYSLTSLKNNLCQTVNVRNIFEKLRA 806
Query: 170 SKTLFAKFEDLFLN 129
K + DL L+
Sbjct: 807 GKYFASVILDLVLD 820
>10_07_0166 -
13746208-13746326,13746461-13746532,13746925-13747104,
13747737-13747785
Length = 139
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 340 NVIGRTRDRQFRLNLVASTIPRLSSLFTRTKSC 438
NV+ R R FR+ LVAS+ L S + SC
Sbjct: 25 NVLARIRINAFRIELVASSYENLLSSAVASVSC 57
>03_06_0570 -
34794678-34795115,34795339-34795920,34796008-34796146,
34796261-34796402,34796504-34796621,34796713-34796820,
34796894-34796968,34797774-34798003,34798086-34798388,
34798949-34799130,34800288-34800371,34800799-34801391
Length = 997
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 423 CK*RAKPGNRGCNKIQPELAVPGPSYYVPKVSSW 322
C+ R NR K +PE+AV G ++ K+SS+
Sbjct: 240 CRRRLAGHNRRRRKTRPEVAVGGSAFTEDKISSY 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,745
Number of Sequences: 37544
Number of extensions: 407655
Number of successful extensions: 1122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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