Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E12
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...   150   1e-37
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   1.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.1  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   4.1  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   4.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   5.4  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   7.1  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    24   9.4  

>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score =  150 bits (363), Expect = 1e-37
 Identities = 78/150 (52%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   SIRYAKEVPNVTKVIANDLSQQAVTMIKHNVAYNQVEELIETSHDDACMLMYKHKQHTKR 182
           SIRYAKE+PNV +++ANDL + AV  I+ NV YN V +++  +  DA  +M+ +K H   
Sbjct: 138 SIRYAKELPNVKRILANDLLENAVKTIEKNVNYNNVSDIVIPNKGDANAVMHMNKFH--- 194

Query: 183 FAVIDLDPYGCPSIFLDSAVQSVQDGGLLLITATDMAVLAGNS-PETCYCKYGAVSLKTK 359
           + VIDLDPYG  + FLD+AVQSV   GLL IT TD AVLAGN+ PE C+  YG  SL++ 
Sbjct: 195 YDVIDLDPYGSAAPFLDAAVQSVSKDGLLCITCTDSAVLAGNAYPEKCFSNYGGSSLRSN 254

Query: 360 CCHEMALRIMLQCIEQHANRYSRYIVPLLS 449
            CHE A+R +L  I   A +Y R I PLLS
Sbjct: 255 FCHEQAVRHLLYAIAASAAKYGRAIKPLLS 284


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +3

Query: 246 SVQDGGLLLITATDMAVLAG-NSPETCYCKYGAVSLKTKC----CHEMALRIMLQC---I 401
           SVQ   L  IT++  A+     +PET Y  +G  +L T+C    C    L   + C   +
Sbjct: 338 SVQVNSLAFITSSLSAITKEPEAPETEYNPHGVFTLLTECYSSTCSRNRLCYSISCPRRL 397

Query: 402 EQHANRYSRYIVPLLS 449
           EQ A  + + + P+LS
Sbjct: 398 EQQARLHLK-VQPVLS 412


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 149  AYVQAQTTYEKVCRNRP*PL--WVSFYIPRL 235
            +YV  QT  ++ C+NR  PL   + FY  RL
Sbjct: 3373 SYVTMQTISDEYCKNRGMPLDYGIRFYFDRL 3403


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 9   RYAKEVPNVTKVIANDLSQQAVTMIKHN----VAYNQVEELIETSHDDACMLMYKHKQHT 176
           R  +  P   +++ N+ S   + M  H     + +   EEL      DA   +++HK++ 
Sbjct: 119 RVPENTPASKRLLTNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYN 178

Query: 177 KRFAVID 197
           +   ++D
Sbjct: 179 EILFMVD 185


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 264 LLLITATDMAVLAGNSPETCYCKY 335
           +LLI+ T  +++  N+PE CY KY
Sbjct: 76  ILLISFT--SIILFNAPEVCYLKY 97


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 68 LLGEVICYYFCYIRHFFSIPYA 3
          LLG   C +FC+ R  + + YA
Sbjct: 33 LLGASACVFFCFFRKRWKVLYA 54


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 227 EYRRTPIRVKVYYGKPFRML 168
           E R  PI +  YY KP+ +L
Sbjct: 551 ELRNVPIEIFEYYNKPWNLL 570


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  VTMIKHNVAYNQVEELIETSHDDACMLMYK 161
           + ++ +N+AY QV + IE   D+   L +K
Sbjct: 122 IDVLVNNIAYQQVAQSIEDIDDEQWDLTFK 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,570
Number of Sequences: 5004
Number of extensions: 37056
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)