Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E12
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical pr...   181   2e-46
AF059608-1|AAD13737.1|  526|Caenorhabditis elegans N2,N2-dimethy...   181   2e-46
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC376.5 protein.
          Length = 526

 Score =  181 bits (441), Expect = 2e-46
 Identities = 83/149 (55%), Positives = 108/149 (72%)
 Frame = +3

Query: 3   SIRYAKEVPNVTKVIANDLSQQAVTMIKHNVAYNQVEELIETSHDDACMLMYKHKQHTKR 182
           ++R++KEVPNV  ++AND S  AV  I+ NV  N VE+++E    DA M M +H+   KR
Sbjct: 105 ALRFSKEVPNVGFIMANDFSDNAVASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKR 164

Query: 183 FAVIDLDPYGCPSIFLDSAVQSVQDGGLLLITATDMAVLAGNSPETCYCKYGAVSLKTKC 362
           F  +DLDPYG  S FLDSAVQ V D G+L++T TDMAVL GN+PE CY KY AV+ + KC
Sbjct: 165 FHAVDLDPYGTASTFLDSAVQCVADRGILMVTCTDMAVLCGNTPEACYNKYDAVTTRMKC 224

Query: 363 CHEMALRIMLQCIEQHANRYSRYIVPLLS 449
           CHE+ LRI+L+ I+  ANRY+RYI PL+S
Sbjct: 225 CHEVGLRILLRAIDSAANRYTRYIEPLVS 253


>AF059608-1|AAD13737.1|  526|Caenorhabditis elegans
           N2,N2-dimethylguanosine tRNA methyltransferase protein.
          Length = 526

 Score =  181 bits (441), Expect = 2e-46
 Identities = 83/149 (55%), Positives = 108/149 (72%)
 Frame = +3

Query: 3   SIRYAKEVPNVTKVIANDLSQQAVTMIKHNVAYNQVEELIETSHDDACMLMYKHKQHTKR 182
           ++R++KEVPNV  ++AND S  AV  I+ NV  N VE+++E    DA M M +H+   KR
Sbjct: 105 ALRFSKEVPNVGFIMANDFSDNAVASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKR 164

Query: 183 FAVIDLDPYGCPSIFLDSAVQSVQDGGLLLITATDMAVLAGNSPETCYCKYGAVSLKTKC 362
           F  +DLDPYG  S FLDSAVQ V D G+L++T TDMAVL GN+PE CY KY AV+ + KC
Sbjct: 165 FHAVDLDPYGTASTFLDSAVQCVADRGILMVTCTDMAVLCGNTPEACYNKYDAVTTRMKC 224

Query: 363 CHEMALRIMLQCIEQHANRYSRYIVPLLS 449
           CHE+ LRI+L+ I+  ANRY+RYI PL+S
Sbjct: 225 CHEVGLRILLRAIDSAANRYTRYIEPLVS 253


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +3

Query: 204 PYGCPSIFLDSAVQSVQDGGLLLITATDMAVLAGNSPETCYCKYGAVSLKTKC 362
           P+ CP+ +    +  + D G L       A + G +  +  C  G V  K  C
Sbjct: 500 PFSCPNFYYQMLITGIDDSGYLYQRIVPAACIGGVNENS--CANGGVYYKGTC 550


>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 204 PYGCPSIFLDSAVQSVQDGGLLLITATDMAVLA--GNSPETCYCKYGAVSLKTKC 362
           P+GCP+  L + V +       L+++T+++     G +PE CYC  G  +    C
Sbjct: 29  PHGCPNFGLCTDVTTT------LVSSTNVSTTYEYGCAPENCYCVDGTTNGTEPC 77


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 312 PETCYCKYGAVSLKTKCCHEMALRIMLQCIEQ 407
           P+  YC  G+ +L T CC +  +    Q +E+
Sbjct: 855 PQNSYCHVGSSALTTLCCPKRKIDPCDQAVEE 886


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,654,528
Number of Sequences: 27780
Number of extensions: 219140
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)