Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E10
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    27   1.2  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   5.0  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    24   8.7  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 12  YYTQKQKCFYVFHCSCVFCVLF*LINPMDTRISVKRIH-LSMNY 140
           YY ++   FYV +    F   F LI       +VK+IH L  NY
Sbjct: 199 YYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGSNY 242


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 397 FN*YTTFLIFTTINSFSIG*ILW-TLESGFHAFPAVRSAGVSSLCN 263
           FN + +F+I   +  F    +L  + E+G   FP V S  V SLC+
Sbjct: 302 FNAFCSFVIVYELPLFFETTLLMPSSEAGVRIFPYVISTSVGSLCS 347


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 261 LLQRELTPADLTAGNAWNP 317
           L QR + P DL  G  W+P
Sbjct: 241 LYQRTIEPIDLKLGEFWDP 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,103
Number of Sequences: 5004
Number of extensions: 34321
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)