Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E10
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0303 + 14108902-14109208,14109259-14109286,14110120-141105...    30   0.70 
11_01_0474 - 3666236-3668050                                           29   2.1  
10_01_0101 - 1222487-1222842,1222935-1223281,1223330-1223490,122...    28   2.8  
01_05_0739 + 24807181-24809121                                         28   2.8  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    27   6.5  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    27   6.5  
03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160     27   8.6  

>04_03_0303 +
           14108902-14109208,14109259-14109286,14110120-14110505,
           14111071-14111604,14112362-14112445,14112933-14113516
          Length = 640

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 120 IHLSMNYLVL*LAGHVPQPIRTVKLVDILLSKVYVQIRRKRA*NVVILLQRELTP 284
           I  S N L L LAG+  + ++   L +I+ +K+Y +   +   NV +L +  L+P
Sbjct: 531 IFTSENGLKLNLAGYFLEEVKVRPLSEIVTTKIYEEATEEEINNVTLLAEMCLSP 585


>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 95  GYKDLGQADSPFNELPCIVIGGTCTAADTDCQ-TGRHITVKGLC 223
           G  D G  D   N  PC   GG+C   +  C+ +  H+    LC
Sbjct: 34  GSDDQGDRDDSSN--PCSAAGGSCAETEASCRNSAGHVVRLSLC 75


>10_01_0101 -
           1222487-1222842,1222935-1223281,1223330-1223490,
           1223605-1223669,1223712-1224669
          Length = 628

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 98  YKDLGQADSPFNELPCIVIGGTCTAADTDCQTGRHITVKGLCPNQEEKGVE 250
           ++D+ +A   FN+   + IGG+        Q G  + V+ L P +EE  V+
Sbjct: 349 FEDIIRATENFNDKHIVGIGGSGKVYKARLQDGNVVIVEKLHPVEEESNVK 399


>01_05_0739 + 24807181-24809121
          Length = 646

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +2

Query: 143 CIVIGGTCTAADTDCQTG---RHITVKGLCPNQEEKGVECCHSVTKRTDTCRSHGG 301
           CI  GG        CQ G   R I  K     +  + + C  S   RTD C +HGG
Sbjct: 279 CIAHGGGRRCQKPGCQKGAEGRTIYCKAHGGGRRCQFLGCTKSAEGRTDHCIAHGG 334


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 272  SL*QNDNILRPFPPDLDIDL*Q*YVYQFDSPYRL 171
            SL Q  N+  PF  D+D DL + Y    D  Y+L
Sbjct: 1521 SLGQKQNMTDPFLSDVDRDLPKLYAVTVDGSYKL 1554


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 186 QSVSAAVHVPPITIQGSSLKGESA*PRSLYP 94
           QS+S  V + P T  GS +KGE   P+ +YP
Sbjct: 163 QSLSKKV-IKPNTGSGSIIKGEKVPPKLIYP 192


>03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160
          Length = 200

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 143 CIVIGGTCTAADTDCQTGRHITVKGLCPNQEEKGVEC 253
           C+V+GGT  +      T R   + G C  Q     +C
Sbjct: 88  CMVLGGTAASLGVAVDTARAALLPGACSVQAPPASQC 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,586
Number of Sequences: 37544
Number of extensions: 217675
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)