Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_E10
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.47
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 29 1.1
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 29 1.4
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 1.4
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z46935-5|CAL36508.1| 709|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z46935-3|CAE48508.1| 794|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z46935-2|CAA87052.1| 792|Caenorhabditis elegans Hypothetical pr... 28 3.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 3.3
U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical ... 27 5.8
Z82093-7|CAB05021.1| 226|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 30.7 bits (66), Expect = 0.47
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 218 LCPNQEEKGVECCHSVTKRTDTCRSHGGECMESTFKCPENLTYRKAVDCSENQKC 382
+CP E C S++K R EC+E FKC +++ C+ C
Sbjct: 406 VCPAMTECVAGLCCSISKT----RKRQSECLEGQFKCGTGQCIEESLKCNRKYDC 456
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 30.7 bits (66), Expect = 0.47
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 218 LCPNQEEKGVECCHSVTKRTDTCRSHGGECMESTFKCPENLTYRKAVDCSENQKC 382
+CP E C S++K R EC+E FKC +++ C+ C
Sbjct: 406 VCPAMTECVAGLCCSISKT----RKRQSECLEGQFKCGTGQCIEESLKCNRKYDC 456
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Frame = +2
Query: 101 KDLGQADSPFNELPCIVIGGTCTAADTDCQTGRHITVKGLC-----PNQEEKGVECCHS- 262
K LG S N++ C G C + C G H + G+C PN+ E +C
Sbjct: 1227 KSLGDICS--NQVQCPT-GSLCKESVCSCPEGHH-ELNGVCLPDCGPNEVEVAGKCVAKS 1282
Query: 263 ----VTKRTDTCRSHGGECMESTFKCPE 334
+ + C+ G C+++T CPE
Sbjct: 1283 LIGEACEADEQCQG-GSSCLDATCTCPE 1309
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 224 PNQEEKGVECCHSVTKRTDTCRSHGGECMES-TFKCPE-NLTYRKAVDCSENQKC 382
P + + EC + T+ C+ G +S T KC E N + ++CSEN+KC
Sbjct: 92 PTCDNENPEC--DLVCMTNVCQCKKGLVRDSATGKCVEKNKCSKCTLECSENEKC 144
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 221 CPNQEEKGVECCHSVTKRTDTCRSHGG-ECME--STFKCPENLTYR-KAVDCSEN 373
CP Q G C + + C ++G EC+ STF CP+N+ + V+C+ N
Sbjct: 1550 CPTQCI-GSRCPYGIRTDGSGCPANGVCECINICSTFNCPQNMECALRRVECTSN 1603
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 140 PCIVIGGTCTAADTD--CQTGRHITVKGLCPNQEEKGVECCHSVTKRTDTCRSHGGECME 313
P I C++ T C+ GR I + C + + ++ + ++ D C H EC E
Sbjct: 1046 PAEKIEQLCSSNSTQFQCKNGRCIPKEWKCDGENDC-LDESDEIDEKGDKC-FHETECAE 1103
Query: 314 STFKC 328
+T KC
Sbjct: 1104 NTIKC 1108
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/46 (21%), Positives = 18/46 (39%)
Frame = +2
Query: 245 VECCHSVTKRTDTCRSHGGECMESTFKCPENLTYRKAVDCSENQKC 382
V C + T+ C++ EC + F+C +C + C
Sbjct: 3080 VTCAGGEDESTELCKTEKKECNKGEFRCSNQHCIHSTWECDGDNDC 3125
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +2
Query: 191 TGRHITVKGLCPNQEEKGVECCHSVTKRTDT-CRSHGGECMESTFKCPENLTYRKAVDCS 367
TGR I + C ++ C + DT C S C F+C N KA C
Sbjct: 3719 TGRCIPRRFTCDGDDD-----CGDRSDEADTLCMSAERNCTAEEFRCNNNKCIAKAWRCD 3773
Query: 368 ENQKC 382
+ C
Sbjct: 3774 NDDDC 3778
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Frame = +2
Query: 92 NGYKDLGQADSPFNELPCIVIGGTCTAADTDCQTGRHITVKGLCPNQEEKGVECCHSVTK 271
+G D G + L C+ CTA + C + I C N ++ G +
Sbjct: 3730 DGDDDCGDRSDEADTL-CMSAERNCTAEEFRCNNNKCIAKAWRCDNDDDCGDGSDETPEC 3788
Query: 272 RTDTCRSHGGECMESTFKCPENLTYRKAV-DCSEN 373
C+ C S+++C N + DC +N
Sbjct: 3789 AQIECKKGWTRC-SSSYRCIPNWAFCNGQDDCRDN 3822
>Z46935-5|CAL36508.1| 709|Caenorhabditis elegans Hypothetical
protein M106.4c protein.
Length = 709
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 191 TGRHITVKGLCPNQEEKGVECCHSVTKRTDTCRSHGGECMEST----FKCPENLTYRKAV 358
T HI G C Q + V + + K +HG E+T FK + A
Sbjct: 117 TREHIREDGACEIQVDTSVHLFNGLHKTETVLLTHGDSVSEATVAPDFKVMAKSGHHVAG 176
Query: 359 DCSENQK 379
C+EN+K
Sbjct: 177 ICNENRK 183
>Z46935-3|CAE48508.1| 794|Caenorhabditis elegans Hypothetical
protein M106.4b protein.
Length = 794
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 191 TGRHITVKGLCPNQEEKGVECCHSVTKRTDTCRSHGGECMEST----FKCPENLTYRKAV 358
T HI G C Q + V + + K +HG E+T FK + A
Sbjct: 202 TREHIREDGACEIQVDTSVHLFNGLHKTETVLLTHGDSVSEATVAPDFKVMAKSGHHVAG 261
Query: 359 DCSENQK 379
C+EN+K
Sbjct: 262 ICNENRK 268
>Z46935-2|CAA87052.1| 792|Caenorhabditis elegans Hypothetical
protein M106.4a protein.
Length = 792
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 191 TGRHITVKGLCPNQEEKGVECCHSVTKRTDTCRSHGGECMEST----FKCPENLTYRKAV 358
T HI G C Q + V + + K +HG E+T FK + A
Sbjct: 200 TREHIREDGACEIQVDTSVHLFNGLHKTETVLLTHGDSVSEATVAPDFKVMAKSGHHVAG 259
Query: 359 DCSENQK 379
C+EN+K
Sbjct: 260 ICNENRK 266
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 140 PCIVIGGTCTAADTD--CQTGRHITVKGLCPNQEEKGVECCHSVTKRTDTCRSHGGECME 313
P I C++ T C+ GR I + C + + ++ + ++ D C H EC E
Sbjct: 1046 PAEKIEQLCSSNSTQFQCKNGRCIPKEWKCDGENDC-LDESDEIDEKGDKC-FHETECAE 1103
Query: 314 STFKC 328
+T KC
Sbjct: 1104 NTIKC 1108
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/46 (21%), Positives = 18/46 (39%)
Frame = +2
Query: 245 VECCHSVTKRTDTCRSHGGECMESTFKCPENLTYRKAVDCSENQKC 382
V C + T+ C++ EC + F+C +C + C
Sbjct: 3080 VTCAGGEDESTELCKTEKKECNKGEFRCSNQHCIHSTWECDGDNDC 3125
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +2
Query: 191 TGRHITVKGLCPNQEEKGVECCHSVTKRTDT-CRSHGGECMESTFKCPENLTYRKAVDCS 367
TGR I + C ++ C + DT C S C F+C N KA C
Sbjct: 3719 TGRCIPRRFTCDGDDD-----CGDRSDEADTLCMSAERNCTAEEFRCNNNKCIAKAWRCD 3773
Query: 368 ENQKC 382
+ C
Sbjct: 3774 NDDDC 3778
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Frame = +2
Query: 92 NGYKDLGQADSPFNELPCIVIGGTCTAADTDCQTGRHITVKGLCPNQEEKGVECCHSVTK 271
+G D G + L C+ CTA + C + I C N ++ G +
Sbjct: 3730 DGDDDCGDRSDEADTL-CMSAERNCTAEEFRCNNNKCIAKAWRCDNDDDCGDGSDETPEC 3788
Query: 272 RTDTCRSHGGECMESTFKCPENLTYRKAV-DCSEN 373
C+ C S+++C N + DC +N
Sbjct: 3789 AQIECKKGWTRC-SSSYRCIPNWAFCNGQDDCRDN 3822
>U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical
protein K05F1.1 protein.
Length = 405
Score = 27.1 bits (57), Expect = 5.8
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Frame = +2
Query: 179 TDCQTGRHITVKGLCPNQEEKGVECCH----SVTKRTDTCRSHGGECMESTFK----CP- 331
+DCQ + G+C ++K EC + +VT ++D C S + + K CP
Sbjct: 81 SDCQPDEFCSTLGVC---DKKNNECLYISSVNVTCKSD-CESSTCILLNNITKEIHCCPA 136
Query: 332 --ENLTYR---KAVDCSENQKC 382
+N Y K + C EN+KC
Sbjct: 137 DQKNFFYNRCSKTIKCGENEKC 158
>AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical
protein C18G1.6 protein.
Length = 464
Score = 27.1 bits (57), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 251 CCHSVTKRTDTCRSHGGEC 307
C + K+ +TCRS GG C
Sbjct: 426 CVEKIRKKPNTCRSTGGMC 444
>Z82093-7|CAB05021.1| 226|Caenorhabditis elegans Hypothetical
protein ZK39.8 protein.
Length = 226
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 316 GFHAFPAVRSAGVSSLCNRMTTFY 245
G H PA + +SS CN M +F+
Sbjct: 124 GLHRTPACSKSPISSSCNSMNSFH 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,328
Number of Sequences: 27780
Number of extensions: 201248
Number of successful extensions: 519
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -