Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E09
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.0  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    28   1.0  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   4.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   5.4  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   5.4  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   7.2  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.5  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 250 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 384
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 321 FAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLE-PDHAGVVRRRALPPRRHSARLE 145
           F+P+ + ++    L H+R + + +  ++ + P +++    ++  +  R L  + H  +L 
Sbjct: 35  FSPQCLFIVYFFYLLHVRINTSPLFIKTTTRPTALIHITKYSEALASRLL--KGHMTQLS 92

Query: 144 RNTVRPPVVTPTAHRFRPT 88
             T+ PP  T   HR +PT
Sbjct: 93  LRTILPPAHTKNLHRQQPT 111


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 196 SCTPTSVAATPTLCTLGTKHRA 131
           +C+P S  AT TL TL   HRA
Sbjct: 301 NCSPDSYNATETLSTLRFGHRA 322


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 367  SPYAY*TSGSSQLLPFCSTRGF 302
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 407 FSKRCQKSYHRDNWLVAAKAFATKNP 484
           FS   + SYH+DN  ++ +A    NP
Sbjct: 474 FSLPSRPSYHKDNSFISKQAIDKSNP 499


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 249 PPQSNSPPGSVLEPDHAGVVRRRALPPRRHSARLERNTV 133
           PP S+ P G V E +   V+ + A  P   + R   NTV
Sbjct: 98  PPVSDQPVGIVHEDESYVVIDKPAGVPVHPTGRYNHNTV 136


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 431  NFSGTSC*KLFILKDR*AVLSQSL 360
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 390 GSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNSPPGS 220
           GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  PP S
Sbjct: 129 GSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAKPPAS 188

Query: 219 VLE 211
           V+E
Sbjct: 189 VIE 191


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 127 AGSYTDRAPLPPNRV 83
           AGSY   APLPP+ +
Sbjct: 128 AGSYPGEAPLPPSSI 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,483
Number of Sequences: 5004
Number of extensions: 49760
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)