Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E08
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   206   2e-54
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   206   2e-54
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.3  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   7.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.5  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   9.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   9.5  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  206 bits (503), Expect = 2e-54
 Identities = 98/161 (60%), Positives = 112/161 (69%)
 Frame = +3

Query: 54  KKWSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXX 233
           KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYVI+RI        
Sbjct: 13  KKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRK 72

Query: 234 XXXXXXATYGKPKSHGVNQLKATRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEV 413
                  TYGKP   GVN LK  R+ +  AEE            NSYWV QD++YK+FEV
Sbjct: 73  RPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEV 132

Query: 414 ILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRG 536
           IL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG
Sbjct: 133 ILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRG 173


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  206 bits (503), Expect = 2e-54
 Identities = 98/161 (60%), Positives = 112/161 (69%)
 Frame = +3

Query: 54  KKWSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXX 233
           KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYVI+RI        
Sbjct: 13  KKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRK 72

Query: 234 XXXXXXATYGKPKSHGVNQLKATRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEV 413
                  TYGKP   GVN LK  R+ +  AEE            NSYWV QD++YK+FEV
Sbjct: 73  RPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEV 132

Query: 414 ILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRG 536
           IL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG
Sbjct: 133 ILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRG 173


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 384  QDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHK 488
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +3

Query: 48  IGKKW--SDVMRFLLRIRVWQY 107
           +GK+W  SD+++  L +RVW +
Sbjct: 327 VGKRWQWSDLLKSCLDLRVWPF 348


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 83  EKSHNIAPLFPYTTPVYICTRPS*R 9
           +K H+  P+ P TTPV  C RPS R
Sbjct: 301 DKEHS-TPIHP-TTPVSRCARPSSR 323


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 84  LRIRVWQYRQLTRMHRAPRPTRPD 155
           L+  +W Y  L R++  PR   PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 163 EGLDTVPSKVMLSSESACAVVAVNAQCP 246
           E L+ +P KV++     CAV  V    P
Sbjct: 841 EKLEDIPGKVVVFERKICAVYPVEGSSP 868


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 508 RPRISRCLCTAFTIQLILGSRRI 440
           +P +  CL ++F+  ++LGSR I
Sbjct: 815 KPFLQACLTSSFSTPVVLGSRLI 837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,771
Number of Sequences: 5004
Number of extensions: 40453
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)