Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E08
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   209   1e-54
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   0.92 
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   0.92 
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    28   4.9  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       28   4.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  209 bits (510), Expect = 1e-54
 Identities = 93/161 (57%), Positives = 115/161 (71%)
 Frame = +3

Query: 54  KKWSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXX 233
           KK SD +R+LLRIR W YRQL+ +HR PRPTRP+KARRLGYRAKQG+V++R+        
Sbjct: 13  KKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRK 72

Query: 234 XXXXXXATYGKPKSHGVNQLKATRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEV 413
                  TYGKPK+HGVN+LK  ++ Q++AE             NSYWVA+DS+YK++EV
Sbjct: 73  RPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEV 132

Query: 414 ILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRG 536
           +LIDP HKAIRR+P   WI   VHKHRE RGLTSAG+ SRG
Sbjct: 133 VLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRG 173



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = +2

Query: 17 MGAYRYIQELYREK 58
          MGAY+Y+QE++R+K
Sbjct: 1  MGAYKYMQEIWRKK 14


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 387 DSSYKYFEVILIDPSHKAIRRDP-KINWIVNAVHKHREMR 503
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 387 DSSYKYFEVILIDPSHKAIRRDP-KINWIVNAVHKHREMR 503
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*KPLATCS 315
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+    P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*KPLATCS 315
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+    P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,816
Number of Sequences: 27780
Number of extensions: 234741
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)