Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E06
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...   135   2e-33
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    79   3e-16
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    76   3e-15
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    71   1e-13
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    66   2e-12
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    64   9e-12
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    60   1e-10
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    32   0.044
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    29   0.41 
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    28   0.72 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   5.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    24   8.9  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    24   8.9  

>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score =  135 bits (327), Expect = 2e-33
 Identities = 61/80 (76%), Positives = 71/80 (88%)
 Frame = +2

Query: 116 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLME 295
           MF+TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+ T + VVL VEKR+TSPLME
Sbjct: 1   MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60

Query: 296 PTTIDKIVEVDRHIACAVSG 355
             +++K+ E+D HI CA+SG
Sbjct: 61  SHSVEKLFEIDSHIGCAISG 80



 Score = 37.5 bits (83), Expect = 9e-04
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 357 LMADSRTLVERARVECQNHWFAYNE 431
           L AD+RT++E ARV+ QNH F Y+E
Sbjct: 81  LTADARTIIEHARVQTQNHRFTYDE 105


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 79.0 bits (186), Expect = 3e-16
 Identities = 38/73 (52%), Positives = 52/73 (71%)
 Frame = +2

Query: 137 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIDKI 316
           YD G+  FSP+GRLFQ EYA +A++  ST IGI   +GV+LA+EK +TS L++P   ++I
Sbjct: 8   YDLGL-FFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRI 66

Query: 317 VEVDRHIACAVSG 355
             VDRHI  A +G
Sbjct: 67  GSVDRHIGIATTG 79


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
 Frame = +2

Query: 122 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLME-P 298
           ++RS YD     FSPEGRL+QVEYA+EAI     A+GI   +G+VLA EK++TS L+E  
Sbjct: 1   MSRS-YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQE 59

Query: 299 TTIDKIVEVDRHIACAVSG 355
            + +K+  +  ++ CAV+G
Sbjct: 60  ESAEKLYHIGDNMLCAVAG 78


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 32/75 (42%), Positives = 47/75 (62%)
 Frame = +2

Query: 131 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTID 310
           S YDR ++ FSP+GRL QVEY  EA++ G+TAI +  +E +V+ VE++    L   +   
Sbjct: 2   SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61

Query: 311 KIVEVDRHIACAVSG 355
           KI  VD H+  A +G
Sbjct: 62  KIAMVDNHVCLAFAG 76



 Score = 31.5 bits (68), Expect = 0.059
 Identities = 15/26 (57%), Positives = 20/26 (76%), Gaps = 3/26 (11%)
 Frame = +3

Query: 345 LCLA---LMADSRTLVERARVECQNH 413
           +CLA   L AD+R L+++ARVE QNH
Sbjct: 70  VCLAFAGLNADARILIDKARVEAQNH 95


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 30/74 (40%), Positives = 46/74 (62%)
 Frame = +2

Query: 134 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIDK 313
           +Y   + TFSP G+L Q+EYA+ A+  G T++GI  ++GVVLA EK+ TS L    +++K
Sbjct: 4   KYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEK 63

Query: 314 IVEVDRHIACAVSG 355
           +  +   I    SG
Sbjct: 64  VCAITPDIGMVYSG 77


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 64.1 bits (149), Expect = 9e-12
 Identities = 32/76 (42%), Positives = 46/76 (60%)
 Frame = +2

Query: 128 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTI 307
           R++YD    T+SP+GRL QVEYA+EAIK GS  +G+ +    VL   KR    L   +  
Sbjct: 3   RNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQ 60

Query: 308 DKIVEVDRHIACAVSG 355
            K++ +D HI  A++G
Sbjct: 61  KKLIRIDDHIGIAIAG 76


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 60.1 bits (139), Expect = 1e-10
 Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
 Frame = +2

Query: 137 YDRGVNTFSPEGRLFQVEYAIEAI-KLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIDK 313
           +DR +  FSPEGRL+QVEYA +A    G T++G++      +  +K++   L++ +T+  
Sbjct: 7   FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKH 66

Query: 314 IVEVDRHIACAVSGS 358
           +  + + I C ++GS
Sbjct: 67  VFPITKGIGCVMTGS 81


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 31.9 bits (69), Expect = 0.044
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 206 IKLGSTAIGISTSEGVVLAVEKRIT-SPLMEPTTIDKIVEVDRHIACAVSGS 358
           I++G+T   +   +GV+LA + R T    +     DK+ ++  +I C  SGS
Sbjct: 21  IRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGS 72


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 200 EAIKLGSTAIGISTSEGVVLAVEKRITS-PLMEPTTIDKIVEVDRHIACAVSGS 358
           +A   G+T +G+   + +VL  + R T+ P++      K+  +  +I CA +G+
Sbjct: 30  KATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGT 83


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 227 IGISTSEGVVLA-VEKRITSPLMEPTTIDKIVEVDRHIACAVSGSY 361
           I +  ++GVV+        SP  E  TID +VE   HIA  V+GSY
Sbjct: 290 IRVKETDGVVMVNFYPAFISPHPENATIDTVVEHIMHIA-NVTGSY 334


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 324 TSTILSIVVGSIRGDVILFSTANTTPSDVD 235
           T   +++V G    DV+ F   + TP++VD
Sbjct: 551 TQNRMTVVAGGFGTDVLFFDHNDETPTNVD 580


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 299  TTIDKIVEVDRHIACAVSGSYG 364
            TT D ++EV   +AC +S   G
Sbjct: 938  TTSDDVIEVKGRVACEISSGDG 959


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 174 LPSGLKVLTPRSYSERVRNILNTSQ 100
           L   L    P SYS  ++N+LN SQ
Sbjct: 161 LTMSLLCFPPSSYSPALKNVLNYSQ 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,610
Number of Sequences: 5004
Number of extensions: 30659
Number of successful extensions: 98
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)