Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E05
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.38 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   0.88 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   6.2  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   6.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.2  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    24   8.2  
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    24   8.2  

>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 300 FLPALLDWDAFRTDGRVFW 356
           F PA L W AF +DGR+ W
Sbjct: 402 FFPAGLFWFAFTSDGRISW 420


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 220  MI*YDSIHYELDSIIKILYTYIRLDQVSC-RLFSTGMLSEPMVECF 354
            M+ YD +  +L+SIIK +   I+ +Q SC ++ S   + + +  C+
Sbjct: 986  MVTYDKLPKKLNSIIKGIMESIKKEQFSCLQMHSASAMMKLISACY 1031


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 238 IHYELDSIIKILYTYIRLDQVSCRLFSTGMLSE 336
           I+  +DSI ++L+  +R  +V+ R+ S   LSE
Sbjct: 161 IYAHIDSIFELLWHGLRDPKVTIRIASADALSE 193


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 376 SLSPHKGQNTLPSVRKASQSRRAGKKLDLVLYTYIRFL*YYPT 248
           +LSP++  N+ PS+  ++ S  +   L  +    +R   Y+P+
Sbjct: 157 NLSPYRSPNSYPSLLPSTHSPHSPAPLSTMQTALMRLRTYHPS 199


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 382  LLSLSPHKGQNTLPSVRKASQSRRAGKKLDLV 287
            L  LSP K  N LPS +  S S+R+GK   L+
Sbjct: 1403 LKPLSPSKISN-LPSSQPGSPSKRSGKMEALI 1433


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 271 LYTYIRLDQVSCRLFSTGMLSEPMVE 348
           LY +I +DQ S    + GMLSE + E
Sbjct: 12  LYRFIAMDQWSDNKDAIGMLSESLKE 37


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 232 DSIHYELDSIIKILYTYIRLDQVSCRLFSTGMLSE 336
           + +H ELD IIK +      DQV   + +    SE
Sbjct: 212 EKMHAELDEIIKTIPRAQNTDQVDFNILTVAYSSE 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,486
Number of Sequences: 5004
Number of extensions: 33487
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)