Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E05
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451...    29   1.1  
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821...    27   4.6  

>04_04_1247 -
           32043776-32043880,32044296-32044505,32044595-32045101,
           32045362-32045583,32046054-32046184,32046737-32047745,
           32047830-32047904,32047995-32048066,32048153-32048328,
           32048494-32048646,32048739-32049234
          Length = 1051

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 286 LYTYIRFL*YYPTHSVYCHIISYM*LKIQINVN*SYQR--GVIKIISLQSTYKVYI 125
           LY+Y RFL Y P +SVY    S +  +I  +    Y++   V+KI+ L+ T +  I
Sbjct: 610 LYSYFRFLKYEP-YSVYGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLI 664


>05_04_0281 +
           19779156-19779805,19781303-19781475,19781909-19782162,
           19782265-19782339,19782431-19782538,19782914-19783031,
           19783347-19783482,19785623-19785797,19786333-19786860,
           19787624-19787836,19787850-19787882
          Length = 820

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 182 LSKGRHQNYISTIYI*GLY*EGRFISGDNKKKYDKSSNINT 60
           L KGR +N+++     G   E R I  DN+ KYDK   ++T
Sbjct: 681 LEKGRLENHVTEFL--GYVSEARNIV-DNRPKYDKQRQVDT 718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,421,449
Number of Sequences: 37544
Number of extensions: 164023
Number of successful extensions: 230
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)