Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E01
         (239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    27   0.44 
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   1.8  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    24   3.1  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    23   5.4  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    22   9.4  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    22   9.4  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    22   9.4  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    22   9.4  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 141 ALCSYGLVKINATRV--TVTLC--PQQLA-ATLAGPGY 43
           ALC +GL K+N  +   T T C  P+ LA   L G GY
Sbjct: 368 ALCDFGLCKLNMAKTDRTNTFCGTPEYLAPELLLGHGY 405


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 88  SDSDPCGVYFDQTVRTQSRQHGRDQKEDA 174
           S S P G Y+ Q  R Q+R    D+K  +
Sbjct: 6   SRSVPTGFYYKQNARMQNRPRFSDRKHSS 34


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 157 DQKEDAGDEAGEGQCHGQG 213
           +++ED GD  GEG   G+G
Sbjct: 200 EEEEDDGDGDGEGDGDGEG 218


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +1

Query: 13  AVDELGYSTRITRTCQGRRELLRTESDSDPCGVYFDQTVR 132
           A+D+   S+ I + C+ ++  +        C  YF   +R
Sbjct: 92  AIDDPSLSSEIYKLCKSKKIPVNAADIPPECDFYFGSEIR 131


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 55  RSWLSLWSIQARRRH 11
           + W+  WS QA R H
Sbjct: 246 KRWIICWSFQAMRPH 260


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 91  HSLSAAARGDLGRSWLSLWSIQARRRHRV 5
           H   A A GD     ++ W IQ R+R RV
Sbjct: 245 HQTLATAGGD---GVVAFWDIQVRKRLRV 270


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 152 DAIKKKMQAMKLEKDNAMDKAD 217
           D +K+K++  KLE +N  +K +
Sbjct: 168 DIMKRKLETEKLEANNKEEKEE 189


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 43  ITRTCQGRRELLRTESDSDPCGVYFDQ 123
           I ++ QG R+L      + PC ++FD+
Sbjct: 681 IGKSEQGVRDLFSRAQMAKPCVLFFDE 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,042
Number of Sequences: 5004
Number of extensions: 13703
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)