Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E01
         (239 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   1.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   1.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    20   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   4.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   4.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   4.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        19   8.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 187 GEGQCHGQGRYQRTAG 234
           G   CH  G Y  TAG
Sbjct: 295 GRSACHSPGVYPSTAG 310


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 1   CAPCAVDELGYSTRITRTCQGRRELL 78
           CAP  V  LGY     + C  R + L
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKCL 92


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 1   CAPCAVDELGYSTRITRTCQGR 66
           CAP  V  LGY     + C  R
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPR 88


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 226 FAGICLVHG 200
           F G CL+HG
Sbjct: 430 FGGSCLIHG 438


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 226 FAGICLVHG 200
           F G CL+HG
Sbjct: 430 FGGSCLIHG 438


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 97  HCHSLSAAARGDLGRSWLSLWSIQARR 17
           HC       + +  RSWLS +  +++R
Sbjct: 388 HCELHMQPRKKNCCRSWLSKFPTRSKR 414


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 97  HCHSLSAAARGDLGRSWLSLWSIQARR 17
           HC       + +  RSWLS +  +++R
Sbjct: 388 HCELHMQPRKKNCCRSWLSKFPTRSKR 414


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 32  TPQG*PGPAKVAASCCGQRVTVTLVAFILTRP 127
           TP G P    V ASC  Q   V     +L  P
Sbjct: 127 TPNGHPSTPIVYASCKLQAAAVDHQGSVLDGP 158


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 97  HCHSLSAAARGDLGRSWLSLWSIQ 26
           + + +S A RG+    WL  W  Q
Sbjct: 269 YSYEISNAFRGNNNLKWLVNWGEQ 292


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 124 SGQNKRHKGHCHSLSAAAR 68
           +G + +H G   S S AAR
Sbjct: 65  TGSSPQHSGSSASTSPAAR 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,143
Number of Sequences: 438
Number of extensions: 951
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)