Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D24
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    29   0.40 
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   0.93 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   2.8  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.6  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   6.6  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    24   8.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    24   8.7  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 170 TTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQPLNCGE 346
           TT   + ++G S DVV+     +D     L +A +  K  V   ++    +  +PL  GE
Sbjct: 423 TTDPINDESGASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGE 481

Query: 347 PNNAVTHKMHAKELDRQTVSYPWT 418
             +   HK+    LD   +SYPW+
Sbjct: 482 MKDK-NHKVLMPSLDDPMLSYPWS 504


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 83  PTGAPPSACFDMIPGHAADVQTVPAPYT--ITTAVSSVKAGHSIDVVISGKTP 235
           P     S  F+ IP    +V+++   Y+  + T +S +KA   +  ++ GK P
Sbjct: 257 PANYITSTAFESIPESGHNVRSLEITYSGSLLTNISLIKADDLVGALVDGKLP 309


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -3

Query: 253  AGHFVFGCFAADNHVNGMTSFYRAD---SCSDGVRRWYCLNISSV 128
            AG   FG    D  +   TSF   D   +CSD  + W C +  S+
Sbjct: 1104 AGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSI 1148


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 149 VPAPYTITTAVSSVKAGHSIDVVISG 226
           VP+P+  +TA SS +  +S+D+  SG
Sbjct: 184 VPSPFGASTASSSSRRVYSVDLRDSG 209


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 112 EARARRCSGGVSAGKRHHRCNCYYVSEHHLFYNFRE 5
           E    RC+   S GK    C C +  E+ L    RE
Sbjct: 249 EGGCPRCNSASSCGKELDTCLCLHAEENALLEAGRE 284


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 268 SFQEDAGHFVFGCFAADNHVNGMTSF 191
           +F+E+ GH   G      HV GM S+
Sbjct: 27  TFEENRGHSFEGVTLQRRHVKGMKSY 52


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = -3

Query: 340 TVEGLREGIIGAYGPSADDLVTLTSFQEDAGHFVFGCFAADNHVNGMTSFYRADSCSDGV 161
           T E L+  ++ AYG +  +    +SF    GH          +V  +  F       DG 
Sbjct: 174 TAEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGA 233

Query: 160 R 158
           +
Sbjct: 234 K 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,646
Number of Sequences: 5004
Number of extensions: 40331
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)