Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D24
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0178 + 6195402-6199158,6199438-6200003 29 2.1
04_03_0118 - 11474060-11475298 28 2.8
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 28 3.7
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 27 4.9
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 27 4.9
06_03_1220 - 28505306-28508497 27 6.5
02_02_0726 - 13374061-13374151,13374576-13374787,13374990-133750... 27 6.5
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 27 6.5
10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517... 27 8.6
10_03_0046 + 7357777-7357992 27 8.6
07_03_0730 + 21030123-21030338 27 8.6
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 27 8.6
05_05_0287 + 23868503-23869045 27 8.6
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 27 8.6
01_06_1527 - 38006174-38006815,38006920-38007420 27 8.6
01_06_1064 + 34237919-34238155 27 8.6
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 395 VCLILWHASCGSRRYLVHHS*GVARRYHRG-LRSKCRRSCHPDELPG 258
VCL H CG R L+ +R Y L+ C HP E+ G
Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEMFG 1183
>04_03_0118 - 11474060-11475298
Length = 412
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 323 RRYHRGLRSKCRRSCHPDE 267
R+YH R C SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 318 VSSGLTVQVPTILSP*RASRRMPAILSSGVLPL 220
VSS + +P + SP +ASRR+ A+ S LPL
Sbjct: 19 VSSQPPLHLPRLRSPHQASRRLSALPFSRALPL 51
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 130 VPWDHVEARARRCSGGVSAGKRHHRCNCYYVSE 32
VPW + ARR + G+ + HR N Y V +
Sbjct: 186 VPWMREDLFARRDARGIDKVRSSHRVNAYDVED 218
>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
Length = 309
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 361 HGVIWFTTVEGLREGIIGAYGPSADDL-VTLTSFQE--DAGHFVFG 233
H +W +E + E +G G ADD+ L S E D+G+ FG
Sbjct: 142 HAALWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFG 187
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 266 ARQGDKIVGTWTVSPDDTFSQPLNCG 343
+R GD IVG W SPD + CG
Sbjct: 43 SRAGDGIVGEWQRSPDCCTWDGVGCG 68
>02_02_0726 -
13374061-13374151,13374576-13374787,13374990-13375002,
13375318-13375655
Length = 217
Score = 27.1 bits (57), Expect = 6.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 82 VSAGKRHHRCNCYYVSEHHL 23
+S K+H +C+ ++VSE H+
Sbjct: 39 ISNAKKHEQCDLFHVSESHI 58
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 70 KRHHRCNCYYVSEHHLFYNFREV 2
+R H CNC ++ H LF + +V
Sbjct: 529 RRIHHCNCNHIPRHTLFTSHADV 551
>10_08_0917 -
21550332-21550685,21550726-21550765,21551766-21551767,
21552094-21552633
Length = 311
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 139 ISSVPWDHVEARARRCSGGVSAG 71
+SS+P DH A A +GG+S G
Sbjct: 206 VSSIPKDHAAAAAVVANGGLSGG 228
>10_03_0046 + 7357777-7357992
Length = 71
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 181 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 71
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>07_03_0730 + 21030123-21030338
Length = 71
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 181 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 71
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/55 (21%), Positives = 23/55 (41%)
Frame = -3
Query: 217 NHVNGMTSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRC 53
+++ +SFY A S + C ++ WD ++ R +G + K C
Sbjct: 231 DYITPWSSFYEAVSQDYKSESFNCFSVIKAAWDLIDERGSTDAGLLQLSKTFRAC 285
>05_05_0287 + 23868503-23869045
Length = 180
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -3
Query: 235 GCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRC 92
G +D G+ S Y A + G V WD V RARRC
Sbjct: 32 GGLVSDLDAAGVASSYYAPFAAAGAGAAIAAVAGVVAWDAVGHRARRC 79
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 122 PGHAADVQTVPAPY-TITTAVSSVKAGHSIDVVISGK 229
P AADV VP P ++ T+V++V AGH + +S +
Sbjct: 50 PAPAADVY-VPTPVPSLPTSVAAVAAGHYHSLAVSAE 85
>01_06_1527 - 38006174-38006815,38006920-38007420
Length = 380
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 320 RYHRGLRSKCRRSCHPDE 267
RY+ R CR SC+PDE
Sbjct: 273 RYYPLFRRHCRPSCYPDE 290
>01_06_1064 + 34237919-34238155
Length = 78
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 181 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 71
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,147
Number of Sequences: 37544
Number of extensions: 334275
Number of successful extensions: 975
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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