Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D24
(432 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81120-2|CAB03344.2| 426|Caenorhabditis elegans Hypothetical pr... 32 0.20
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 28 2.5
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 2.5
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 2.5
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 2.5
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 28 2.5
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 5.8
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 5.8
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 5.8
AF036702-7|AAB88372.1| 360|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z81120-2|CAB03344.2| 426|Caenorhabditis elegans Hypothetical
protein T12D8.4 protein.
Length = 426
Score = 31.9 bits (69), Expect = 0.20
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 134 ADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPD 313
A + VP YT+ ++ S G + + K ++ + +R+ +VG ++ D
Sbjct: 98 AGIHQVPFSYTLPKSLPSSFEGEFGHIRYTCKAICERPWDFDIVSRKAFTVVGIEDINSD 157
Query: 314 DTFSQPLNCGEPNNAVT 364
++P C E N+AVT
Sbjct: 158 PKLNEPATCVESNHAVT 174
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 161 YTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDD 316
YT+T +S HS++V++ GK P + + + D+ W V DD
Sbjct: 1928 YTLTATNASGSDKHSVEVIVLGK-PSSPLGPLEVSNVYEDRADLEWKVPEDD 1978
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 161 YTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDD 316
YT+T +S HS++V++ GK P + + + D+ W V DD
Sbjct: 2457 YTLTATNASGSDKHSVEVIVLGK-PSSPLGPLEVSNVYEDRADLEWKVPEDD 2507
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 161 YTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDD 316
YT+T +S HS++V++ GK P + + + D+ W V DD
Sbjct: 2138 YTLTATNASGSDKHSVEVIVLGK-PSSPLGPLEVSNVYEDRADLEWKVPEDD 2188
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 161 YTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDD 316
YT+T +S HS++V++ GK P + + + D+ W V DD
Sbjct: 1928 YTLTATNASGSDKHSVEVIVLGK-PSSPLGPLEVSNVYEDRADLEWKVPEDD 1978
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 161 YTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDD 316
YT+T +S HS++V++ GK P + + + D+ W V DD
Sbjct: 2457 YTLTATNASGSDKHSVEVIVLGK-PSSPLGPLEVSNVYEDRADLEWKVPEDD 2507
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 161 YTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDD 316
YT+T +S HS++V++ GK P + + + D+ W V DD
Sbjct: 2138 YTLTATNASGSDKHSVEVIVLGK-PSSPLGPLEVSNVYEDRADLEWKVPEDD 2188
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 161 YTITTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDD 316
YT+T +S HS++V++ GK P + + + D+ W V DD
Sbjct: 1347 YTLTATNASGSDKHSVEVIVLGK-PSSPLGPLEVSNVYEDRADLEWKVPEDD 1397
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 256 DAGHFVFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 131
D VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 4000 DCDKSVFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4042
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -3
Query: 241 VFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 131
VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 3997 VFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4034
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -3
Query: 241 VFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 131
VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 4008 VFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4045
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -3
Query: 241 VFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 131
VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 4008 VFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4045
>AF036702-7|AAB88372.1| 360|Caenorhabditis elegans Hypothetical
protein F33D4.4 protein.
Length = 360
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 88 GGVSAGKRHHRCNCYYVSEHHLFYNFRE 5
GG+ G H C ++VSEH++F +E
Sbjct: 215 GGLVLGMGLHPCAGHFVSEHYVFKKDQE 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,262
Number of Sequences: 27780
Number of extensions: 251073
Number of successful extensions: 638
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -