Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D23
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    28   0.89 
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   8.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.3  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   8.3  

>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 104 DDNKDDFNSVRNYTNILRSSRDNKKF*HLENSSQPFLRRIRIYFER 241
           +  KDDF++ +NYT  L  S +  +    E S   + +  R++ E+
Sbjct: 246 NSKKDDFSTFKNYTPYLNDSSEAWEKESYEKSPSVYEKTFRLFSEK 291


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  SLIIAYKQYNGDDNKDDFNSVRNY 142
           SL  ++K+ N D N D +NS  NY
Sbjct: 219 SLKASFKRGNIDYNLDSYNSTNNY 242


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 519 YLSHITLNYLNVLLF 475
           ++SH+T NY N LLF
Sbjct: 804 FVSHVTANYSNQLLF 818


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 318 NVMNSYCSESLKCGAFFFDV 377
           N++N +CS SL   A+ FDV
Sbjct: 185 NLLNIFCSNSLVEKAYLFDV 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,154
Number of Sequences: 5004
Number of extensions: 42515
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)