Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D22
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    27   1.9  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   4.4  
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar...    25   5.9  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   7.7  

>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 257 HSSLESRPSAMSLAFCSTSIAGPALIIASLTLWPTPSSSVGK 132
           HS L SR S+ S    S + + P L I       +PSSSVG+
Sbjct: 281 HSRLPSRTSSFSSKHRSVTFSPPDLAILFDPSITSPSSSVGQ 322


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 365 LPNFLDYRNNRYFFKVCNDIVYK*FLW 285
           LPN   + N   F KVC  ++Y  F+W
Sbjct: 213 LPNLRIFSN---FIKVCRPLIYMLFMW 236


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 164 LWPTPSSSVGKSHAVTVE 111
           L P PSSS+ +S AVT+E
Sbjct: 172 LLPPPSSSIPRSKAVTIE 189


>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
           factor|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 215 FCSTSIAGPALIIASLTLWPTPSSSVGK 132
           FC++ IA    +  + TLW TP  ++ K
Sbjct: 98  FCTSKIAKDIFLEWNWTLWLTPPETIAK 125


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 267 FYNIRCPKELLVNNIITNFK 326
           F+ I CP EL+++ +I N K
Sbjct: 328 FFIIHCPNELVIDLVIENHK 347


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 230 AMSLAFCSTSIAGPALIIASLTLWPTPSSSVGKSHAVTVETNMTQMATKIR 78
           A++L F ST+  GP L      L+P P  S+       ++ N  +++ K R
Sbjct: 105 ALNLRF-STAFTGPMLANLYCALYPNPGYSLCHESYFELKQNENEVSEKDR 154


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 260 YHSSLESRPSAMSLAFCSTSIAGPALIIASLTLWPTPSSSVGKSHAVTVETNMT 99
           Y++S     S +S A  S+S   P  II S +   T SSS   S   +  TN+T
Sbjct: 223 YNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLT 276


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 267  FYNIRCPKELLVNNIITNFK 326
            FYNI+  K +L+N   T+FK
Sbjct: 1158 FYNIKLAKNMLLNTEDTSFK 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,626
Number of Sequences: 5004
Number of extensions: 41317
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)