Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D22
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1127 - 26334225-26334500,26334600-26334761,26334849-263349...    30   1.5  
07_01_0257 - 1925145-1926140                                           28   6.0  
01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628           27   7.9  

>12_02_1127 -
           26334225-26334500,26334600-26334761,26334849-26334938,
           26335075-26335236,26335330-26335431,26335562-26335633,
           26335716-26335851,26335939-26336120,26336387-26336406,
           26336440-26336521,26336612-26336713,26336796-26336909,
           26337412-26337462,26337583-26337651,26337972-26338049,
           26338357-26338458,26338785-26338865,26339008-26339109,
           26339217-26339576
          Length = 780

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -3

Query: 275 IIKYVYHSSLESRPSAMSLAFCSTSIAGPALIIASLTLWPTPSSSVGK--SHAVTVETNM 102
           +I+ ++    ESR S   +A C  +++G +L    LT W   S ++G   + A+  ETN 
Sbjct: 313 LIRRIFEFVAESRSSEAFVALCLLTVSGTSL----LTQWLGFSDTLGAFLAGAILAETNF 368

Query: 101 -TQMATKIR 78
            TQ+   IR
Sbjct: 369 RTQIEADIR 377


>07_01_0257 - 1925145-1926140
          Length = 331

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 254 SSLESRPSAMSLAFCSTSIAGPALIIASLTLWPTPSSSVGKSHAVT 117
           SSL   P   +L F  TS+AGPA    +L     PS    K+ A+T
Sbjct: 108 SSLHLVPKPKALLFAPTSMAGPAAKKLALEGKAAPSLVKKKAAAIT 153


>01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628
          Length = 366

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 191 PALIIASLTLWPTPSSSVGKS 129
           PALI   LTLWP   ++VG+S
Sbjct: 264 PALIPVPLTLWPPNVANVGES 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,558
Number of Sequences: 37544
Number of extensions: 225927
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)