Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D22
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z66515-13|CAA91355.1|  184|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z48638-11|CAA88572.1|  184|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    27   7.1  
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    27   7.1  
AF106576-2|AAC78180.1|  241|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical
           protein T19C4.4 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 76  ILIFVAICVMFVSTVTAWDFPTELEGVGQRVRDAIISAGP 195
           ILI +A  + F+S+   WD+P  +E V +    A  +A P
Sbjct: 133 ILIVLAYILPFMSSRVVWDYPMRVEYVDETDSYAFTTAMP 172


>Z66515-13|CAA91355.1|  184|Caenorhabditis elegans Hypothetical
           protein R53.8 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 227 MSLAFCSTSIAGPALIIASLTLWPTPSSSVGKSHAVT-VETNMTQMATK 84
           +S+A CSTS+A P  +   L   P   S+  KS  +  V  N T++  K
Sbjct: 18  LSVALCSTSLAAPLNVEYVLAPVPLKQSTSDKSKMIAIVPQNTTKIVIK 66


>Z48638-11|CAA88572.1|  184|Caenorhabditis elegans Hypothetical
           protein R53.8 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 227 MSLAFCSTSIAGPALIIASLTLWPTPSSSVGKSHAVT-VETNMTQMATK 84
           +S+A CSTS+A P  +   L   P   S+  KS  +  V  N T++  K
Sbjct: 18  LSVALCSTSLAAPLNVEYVLAPVPLKQSTSDKSKMIAIVPQNTTKIVIK 66


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
           protein ZK637.9a protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 225 VSSLLQYIDRWTSANYRISHSLADTFKFCGKVP 127
           +SSL++++D  T  +  +  +L  T K CG +P
Sbjct: 133 LSSLIRFVDSQTPGDSNLDVNLEMTTKMCGIIP 165


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
           pyrophosphokinase protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 225 VSSLLQYIDRWTSANYRISHSLADTFKFCGKVP 127
           +SSL++++D  T  +  +  +L  T K CG +P
Sbjct: 133 LSSLIRFVDSQTPGDSNLDVNLEMTTKMCGIIP 165


>AF106576-2|AAC78180.1|  241|Caenorhabditis elegans Hypothetical
           protein W07E6.5 protein.
          Length = 241

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 347 YRNNRYFFKVCNDIVYK*FLWAPNIIK-YVYHSSLESRPSAMSLAF 213
           Y N+  +  +   IV   FLWAP+ +  YV+ S++ S   A SL F
Sbjct: 158 YSNSELWVLLILWIVCALFLWAPSFLGIYVHVSTIVSPQLAFSLQF 203


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 22  QFEVLIRNK*KINMNSVRILIFVAICVMFVSTVTAWDFPTELEGVGQRVRDAIISAG 192
           + E  I  + K  +N   I++F+A+  +     + W FP ++  V   VR+A++  G
Sbjct: 229 EMEEQIPQENKSYLNRYSIVLFIALLTIVCMVFSPWPFPGDILRV---VRNALVYLG 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,383
Number of Sequences: 27780
Number of extensions: 230951
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)