Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D22
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.30 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +3

Query: 105 VCFNGDSVGLSHRT*RCRPESERCD--N*RWSSDRCTAK 215
           V FNGD   L      C P  + CD  +      RCT K
Sbjct: 423 VAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGK 461


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 554 NKIGNKYDSYNKNGNINTGMARLFVTSYDIVQ 459
           N   N Y++ N N N N    +L+    +I Q
Sbjct: 332 NYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 542 NKYDSYNKNGNIN 504
           N Y++YN N N N
Sbjct: 96  NNYNNYNNNYNTN 108


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 248 MKNDIHIL*Y*VPKGI 295
           +KN  H++ Y +PKGI
Sbjct: 517 IKNVSHVINYDLPKGI 532


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 111 NKHDANGDENQNSNRVHVYFLF 46
           N H  N D ++ S  V V FL+
Sbjct: 317 NYHHRNADTHEMSEWVKVVFLY 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,293
Number of Sequences: 438
Number of extensions: 3299
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)