Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D20
         (292 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q41E23 Cluster: Major facilitator superfamily MFS_1 pre...    30   8.5  
UniRef50_Q38620 Cluster: 26 protein; n=1; Enterobacteria phage P...    30   8.5  

>UniRef50_Q41E23 Cluster: Major facilitator superfamily MFS_1
           precursor; n=1; Exiguobacterium sibiricum 255-15|Rep:
           Major facilitator superfamily MFS_1 precursor -
           Exiguobacterium sibiricum 255-15
          Length = 394

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 42  DRQKILLICLSNE*SIEVYYILIIPIREYLRYINIKIVHNY 164
           D +++LLI  S    + V Y+L++P+  +L  I ++I H +
Sbjct: 72  DVKRMLLISASLFTMMSVLYLLVLPLNSFLYLIIVRIFHGF 112


>UniRef50_Q38620 Cluster: 26 protein; n=1; Enterobacteria phage
           P1|Rep: 26 protein - Bacteriophage P1
          Length = 125

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 10/27 (37%), Positives = 22/27 (81%)
 Frame = +3

Query: 27  LIRAADRQKILLICLSNE*SIEVYYIL 107
           ++RA  R++++L+C SN+ ++ +YY+L
Sbjct: 28  ILRAELRKEVMLMCESNDKNLTIYYVL 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,452,006
Number of Sequences: 1657284
Number of extensions: 2899185
Number of successful extensions: 5549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5549
length of database: 575,637,011
effective HSP length: 74
effective length of database: 452,997,995
effective search space used: 9965955890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)