Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D20
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   3.0  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    23   6.9  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    23   6.9  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    23   9.1  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    23   9.1  

>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -3

Query: 161 IMNYFYVDISQIFTNRNY*YIIHFNRLLVRQTYKQDFLPI 42
           I++Y YV +  I  ++++ Y+I     L++ + K+  + +
Sbjct: 338 IVSYIYVKLDLIINSKHFGYLILLYTTLIKLSKKERIMDV 377


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 137 ISQIFTNRNY*YIIHF 90
           ISQIFT  NY Y++++
Sbjct: 398 ISQIFTAANYEYMVYW 413


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 167 NIIMNYFYVDISQIFTNRNY*YIIHF 90
           NI      + +SQ+FT  NY Y++++
Sbjct: 375 NISARSIKLVVSQVFTAANYEYLVYW 400


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 102 ILIIPIREYLRYINIKIVHNYILTS 176
           +L+  +REY+   N+K   N +LT+
Sbjct: 111 VLLFALREYVLSSNVKDQRNALLTA 135


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 12  AAALNLIRAADR-QKILLICLSNE*SIE 92
           A  L+  R A R +K+LLIC  N+ SIE
Sbjct: 150 ARKLSAARLAFRFRKVLLICNDNKESIE 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 885,346
Number of Sequences: 5004
Number of extensions: 12766
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)