Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D20
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689...    27   1.9  
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    26   5.8  
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    25   7.7  

>09_06_0274 +
           21967740-21968230,21968411-21968550,21968711-21968905,
           21969524-21969652,21970063-21970218,21970507-21970589,
           21972229-21972433,21972601-21972805,21973059-21973194,
           21973990-21974164,21974470-21974528,21974642-21974716,
           21974804-21974920,21975010-21975080,21975170-21975473,
           21975721-21976086,21976404-21976514
          Length = 1005

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 152 YFYVDISQIFTNRNY*YIIHFNRLLVRQTYKQDFLPICSPDQV*SGRPAV 3
           Y Y  + + + N    Y+   N + +R   K      CSP+   +GRP V
Sbjct: 732 YIYYQLDKFYQNHRR-YVKSLNDMQLRNPKKVADTQYCSPEATANGRPIV 780


>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 3   HRGAAALNLIRAADRQKILLIC 68
           +RG+   NLIR AD + I L C
Sbjct: 215 YRGSDTFNLIREADEEPIYLNC 236


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 42  DRQKILLICLSNE*SIEVYYILIIPIREYLRYIN 143
           D Q ILL CL +E S  V    +  +  ++ Y+N
Sbjct: 159 DLQPILLKCLQDEASSRVRIAALKAVGSFIEYVN 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,234,339
Number of Sequences: 37544
Number of extensions: 69105
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)