Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D20
         (292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    25   9.1  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    25   9.1  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 173  RKNIIMNY-FYVDISQIFTNRNY*YIIHFNRLLVRQTYKQDFLPICSPD 30
            +KNI +N  FYV +S +  ++N  Y  H+N   V +    D L +C  D
Sbjct: 1223 QKNIRLNKPFYVGMSILDLSKNLMYDFHYN---VMEPKYGDGLKLCYQD 1268


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -3

Query: 125 FTNRNY*YIIH---FNRLLVRQTYKQDFLPIC 39
           F   NY   +H   F++ ++   Y Q+FLPIC
Sbjct: 175 FERINYDVSVHAYSFDQDVIYDGYNQEFLPIC 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,797,470
Number of Sequences: 27780
Number of extensions: 70114
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)