Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D19
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    27   0.82 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   2.5  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   3.3  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    24   5.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   5.8  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    24   5.8  

>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 324 PLFVCVLLHCSQNLNDRCSHRI*VEISMRRFVLLLVGGSC 205
           P+F+C+L   S+N N +    I +   MR F  L+   +C
Sbjct: 45  PMFICLLRDSSRNENRKKKVSIGLRTIMRAFSFLMQVATC 84


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +3

Query: 24  RRRVRSIQDYHMDTLKYWDIGSAFLIGGNAKVY---EGSGWVHVSV 152
           R+  RSI  +H +T   W   SAF++      Y     S WV  +V
Sbjct: 195 RKCFRSILSWHNETFNIWTHLSAFIVFFAVLAYFYPSSSSWVSSNV 240


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 12  ERCVRRRVR-SIQDYHMDTLKYWDI 83
           ER V + V+ +I DY+ DT + WDI
Sbjct: 503 ERTVPKTVKEAICDYNSDTSRTWDI 527


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
 Frame = +2

Query: 2   HNA*TMRAPSS*KHPGLPYGYVKILGHRFSIPNWWKRKSXXXXXXXXXXXX--------H 157
           HN+  +  PSS +H       +  L   F+ P  W   S                    H
Sbjct: 48  HNSYPLSTPSSFQHGQTRLPPINCLAEPFNRPQPWHSNSAAPASSSPTSATLSTAAHPVH 107

Query: 158 SRVQQESS*NHGYRKLQLPPTNSRTNR 238
           +   Q +  +  Y    +PPTNS T++
Sbjct: 108 TNAAQVAGSSSSY-VYSVPPTNSTTSQ 133


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 216 QPTAEQIDALKSLLRCGVNNGHLDSDYNVVGHR 314
           QP     +   S +RC   N   D+ Y+ +GH+
Sbjct: 333 QPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHK 365


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 129 SGWVHVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALKSLLRCGVNNGHLDSDY 296
           SGW + +  T+AY       T I +++    TA+    ++ ++  G   G  D  +
Sbjct: 519 SGWSNTNYDTYAYWHATNGQTGIASFSMGSLTADTYVPVRFVVANGAGKGGFDFSF 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,311
Number of Sequences: 5004
Number of extensions: 29912
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)