Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D19
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    29   0.98 
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896...    29   1.3  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    28   2.3  
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336...    27   5.2  
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308...    26   9.1  
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462...    26   9.1  

>03_02_0901 +
           12267042-12267182,12267949-12268095,12268163-12268253,
           12268367-12268485,12268779-12268969,12269440-12269650,
           12270072-12270309,12270944-12271329,12271933-12271956,
           12271984-12272077,12272341-12272525,12273025-12273255,
           12273665-12273730,12273816-12274034,12274764-12275003,
           12275244-12275423,12276269-12276535,12276612-12276815,
           12276896-12277048
          Length = 1128

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 60  DTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALR 185
           + ++Y+D     L+GG     E +G++  S+  H ++RK L+
Sbjct: 754 ELVEYFDPCHPILVGGIGLGEENTGYMQASLKRHRWHRKVLK 795


>09_04_0300 -
           16488358-16488447,16488684-16489116,16489377-16489642,
           16490015-16490044,16490282-16490606,16491752-16492035,
           16492154-16492376,16493117-16493173,16494454-16494947
          Length = 733

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 251 RFQCVDLFCCWLVGVVIS 198
           R+ CVD  CCWLVG V S
Sbjct: 63  RWSCVDS-CCWLVGCVCS 79


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 21   VRRRVRSIQDYHMDTLKYWDIGSAFLIGGNAKVYEGSGW 137
            V++ V    D H  +   W   +  L+GG A  Y G  W
Sbjct: 2828 VKKDVLGSCDSHQKSPSTWGATAKVLLGGRAWAYNGGAW 2866


>01_05_0141 -
           18532695-18532709,18533255-18533365,18533585-18533617,
           18534011-18534140,18534219-18535660,18535990-18536358
          Length = 699

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 114 KVYEGSGWVHVSVPTHAYNRKALRIT 191
           K +E SGW+HVS PT   ++  + IT
Sbjct: 226 KHFEHSGWIHVS-PTFDVHKLTIAIT 250


>11_06_0459 +
           23830204-23830350,23830419-23830592,23830738-23830865,
           23830947-23831065,23831136-23831217,23831303-23831441,
           23831624-23831778,23831852-23832149,23832325-23832453,
           23832529-23832711,23832840-23832899,23832973-23833101,
           23833177-23833359,23833446-23833490,23833576-23833665,
           23833806-23833892,23833974-23834045,23834120-23834302
          Length = 800

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 86  TYVPIF*RIHMVILDASNSTAHAS 15
           T V  F  IHM++LDA  ++ H S
Sbjct: 33  TMVDEFYGIHMIVLDAEGNSIHVS 56


>03_06_0467 +
           34145126-34145187,34145403-34145759,34146161-34146248,
           34146361-34146506,34146892-34146936,34147030-34147133,
           34147225-34147361,34147651-34147761,34148455-34148664
          Length = 419

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +3

Query: 75  WDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALKSL 254
           W+     L+G    +Y G     V     AY+R A+R        + +P +  +DAL   
Sbjct: 207 WEARMGQLLG-KKYIYLGLFDTEVEA-ARAYDRAAIRFNGREAVTNFEPASYNVDALPDA 264

Query: 255 LRCGVNNGHLDSDYNV 302
               + +G LD D  +
Sbjct: 265 GNEAIVDGDLDLDLRI 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,164,620
Number of Sequences: 37544
Number of extensions: 210473
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)