Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D19
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29377-4|AAA68712.1|  412|Caenorhabditis elegans Hypothetical pr...    29   0.89 
Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical p...    27   2.7  
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    27   2.7  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   3.6  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   3.6  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z54236-3|CAA90985.1|  196|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>U29377-4|AAA68712.1|  412|Caenorhabditis elegans Hypothetical
           protein K05F1.3 protein.
          Length = 412

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 120 ILLRFHQLGMLNLCPNILTYPYGNPGCF*LDGARIVQAL 4
           I+ + H LG +N    I+   YG PG   LD A IV+AL
Sbjct: 61  IVKQAHSLGFMN---TIIPEKYGGPGLSNLDTALIVEAL 96


>Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 63  TLKYWDIGSAFLIGGNAKVYEGSGWVHV 146
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


>Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 63  TLKYWDIGSAFLIGGNAKVYEGSGWVHV 146
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +3

Query: 6   MLERCVRRRVRSIQDYHMDTLKYWDIGSAFLIGGNAKVYEG---SGWVHVSVPTHAYNRK 176
           +LE CV     S+QD H+D+ K + + S  ++ G   V E    S   H    +  Y ++
Sbjct: 282 LLEICVGMPAFSVQDQHLDSFKKYVLIS-LILKGKVDVTENGDKSAIRHFKTKSPEY-KQ 339

Query: 177 ALRITVIGNYNSHQPTAEQIDALKSLLR 260
              I    + N+H      + + K  LR
Sbjct: 340 FSEIRFSRSSNTHSAVESLVKSAKDRLR 367


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 243 LKSLLRCGVNNGHLDSDYNVVGHRQ 317
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 337 IEELLACELHNVHIHEDYRLILHEQ 361


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 233 LFCCWLVGVVISYNRDSKSFPVVRVSGHANVH-PTGSFIY 117
           +F CWL    +S    +K F  +       +H P+G+ +Y
Sbjct: 4   IFLCWLAIATVSQTVSAKKFMKIFADAGIGIHCPSGNKVY 43


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 9   LERCVRRRVRSIQDYHMDTLKYWDIGSAFL 98
           +ERC     +S  D HM ++ + D G   L
Sbjct: 501 IERCYEAHTKSFNDLHMHSMVFLDFGKGKL 530


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 9   LERCVRRRVRSIQDYHMDTLKYWDIGSAFL 98
           +ERC     +S  D HM ++ + D G   L
Sbjct: 501 IERCYEAHTKSFNDLHMHSMVFLDFGKGKL 530


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 243 LKSLLRCGVNNGHLDSDYNVVGHRQ 317
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 339 IEELLACELHNVHIHEDYRLILHEQ 363


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 180 LRITVIGNYNSHQPTAEQIDALKSLLRCGVNNGHL 284
           +R+   GN  S    A+ +DA K+LL   +NNGHL
Sbjct: 13  VRVAHQGNPQSSSLQAD-MDAKKALLSQNLNNGHL 46


>U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical
           protein T08G2.3 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 120 ILLRFHQLGMLNLCPNILTYPYGNPGCF*LDGARIVQAL 4
           I+ + H LG++N  P I    YG PG   L+ A IV+AL
Sbjct: 67  IVRQAHSLGLMN--PQI-PEKYGGPGMTTLETALIVEAL 102


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 180 LRITVIGNYNSHQPTAEQIDALKSLLRCGVNNGHL 284
           +R+   GN  S    A+ +DA K+LL   +NNGHL
Sbjct: 13  VRVAHQGNPQSSSLQAD-MDAKKALLSQNLNNGHL 46


>Z54236-3|CAA90985.1|  196|Caenorhabditis elegans Hypothetical
           protein C27B7.2 protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 48  DYHMDTLKYWDIGSAFLIGGNAKVYE 125
           DY M  L ++D  S   + GN +VY+
Sbjct: 138 DYRMQNLSWFDGYSVLTVDGNGEVYK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,580,645
Number of Sequences: 27780
Number of extensions: 175606
Number of successful extensions: 419
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)