Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D18
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.20 
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   2.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   9.9  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    24   9.9  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   9.9  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    24   9.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 285 CTASVSACRCTTTPSTAAGRLSTRCPTDTSCLYKSMLIRADRVSTIRSYRARSFADIST 109
           CT S S    T+TP T+    +T C T TS  Y S  + +  ++T     + S    ST
Sbjct: 427 CTTSTSV-PYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTST 484



 Score = 29.5 bits (63), Expect = 0.26
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 285 CTASVSACRCTTTPSTAAGRLSTRCPTDTSCLYKSMLIRADRVSTIRSYRARSFADIST 109
           CT S S    T+TP T+    +T C T TS  Y S  + +  ++T     + S    ST
Sbjct: 450 CTTSTSV-PYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTST 507



 Score = 28.7 bits (61), Expect = 0.46
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -3

Query: 351 PLTCSLHVRNKRLHCMSRPVWPCTASVSACRCTTTPSTAAGRLSTRCPTDTSCLYKSMLI 172
           PLT +    +  +   S PV     ++S+    +TP T+    +T C T TS LY S  +
Sbjct: 490 PLTTTNCTTSTSVPYTSTPVTSSNYTISS----STPVTSTPVTTTNCTTSTSVLYTSTPV 545

Query: 171 RADRVSTIRSYRARSFADIST 109
            +  ++T     + S    ST
Sbjct: 546 TSTPLATTNCTTSTSVPYTST 566



 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 255 TTTPSTAAGRLSTRCPTDTSCLYKS 181
           ++TP T+    +T C T TS LY S
Sbjct: 577 SSTPVTSTPVTTTNCTTSTSVLYTS 601


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 116 MSANDRARYDLIVLTRSALINIDLYKQEVSVGQRVLSLPA 235
           M +  R   D +  T  A IN+DL KQEV  G     L A
Sbjct: 362 MESLQRMVIDFVSDTSPAGINLDLVKQEVQQGDLTYVLQA 401


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 40   NECHCIGSRHLPAYQGLQPEQLHRTDVGERPRPI 141
            NE H +G+     YQ LQP   H  ++     PI
Sbjct: 1716 NEVHGVGAEMASPYQPLQPASAHLPNLQPTLAPI 1749


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 22  HWSRLINECHCIGSRHLPAYQGLQPEQLHRTDVGERPRP 138
           H+  L   C  I    L ++  + P Q   ++ GERP P
Sbjct: 119 HFLSLFAFCRTILFSLLTSFLLVPPPQFFHSEAGERPTP 157


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 168 ADRVSTIRSYRARSFADISTVKLFWL*SLVS--RKVPASD 55
           A ++ T +  +A S  +I  VKL WL   +S  +++P SD
Sbjct: 537 AAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESD 576


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 351 PLTCSLHVRNKRLHCMSRPVWPCTASVSA 265
           PL  +LH++ KRL+  +R   P   S+ A
Sbjct: 191 PLYSALHIQGKRLYEYAREGIPLPESIKA 219


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 18  GTLVTFDKRVSLYRKPAPSCLPRTTARTTSPY*CR 122
           G  +T DK  SL RK   +     T +TT  Y CR
Sbjct: 102 GLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCR 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,460
Number of Sequences: 5004
Number of extensions: 27597
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)