Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D18
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555 30 1.1
08_02_1356 - 26348953-26350062 29 1.8
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 29 2.4
10_05_0013 + 7986281-7986434,7986664-7986743,7987583-7987656,798... 28 3.2
03_02_0549 - 9395978-9396428,9396517-9396863 28 3.2
01_06_0674 - 31090767-31091087 28 3.2
11_01_0127 + 1031690-1031952,1032850-1032857,1034679-1034927,103... 28 4.3
02_02_0210 + 7873962-7874753 28 4.3
02_02_0209 + 7866348-7867139 28 4.3
12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595... 27 5.6
07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319 27 5.6
01_01_0264 - 2139865-2140036,2140443-2140499,2140940-2141091 27 7.4
10_01_0301 - 3319562-3320008 27 9.8
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 27 9.8
04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743 27 9.8
>12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555
Length = 427
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 351 PLTCSL-HVRNKRLHCMSRPVWPCTASVSACRCTTTPSTAAGRLS 220
PL +L VR+ +RP PCTA S R TT PS GRL+
Sbjct: 28 PLAVALVEVRSAAAFDRARPPTPCTAPSSPGRITTAPS--RGRLA 70
>08_02_1356 - 26348953-26350062
Length = 369
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 348 LTCSLHVRNKRLHCMSRPVWPCTASVSACRCTTTPSTAAGRLSTRCPTD 202
L+ + H R LH ++ P ++A TTT S A GRL+ R P D
Sbjct: 186 LSPTTHYRGGVLHVLAYPDRVVLMDLAATTTTTT-SVAPGRLAPRLPDD 233
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 112 YGEVVLAVVLGKQEGAGFRYSDTRL 38
+G ++L ++ GK+ G +RY+D +L
Sbjct: 545 FGVLILEIISGKRTGGSYRYNDGKL 569
>10_05_0013 +
7986281-7986434,7986664-7986743,7987583-7987656,
7988186-7988252
Length = 124
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 180 SIYINRRCQWGSGC*VSPRRWRAWWCTGRRTRWP 281
++ ++RRC C PRR WWC R+ WP
Sbjct: 17 TVRLSRRCP--HRC--IPRRAYLWWCRCRQPPWP 46
>03_02_0549 - 9395978-9396428,9396517-9396863
Length = 265
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = -3
Query: 285 CTASVSACRCTTTPSTAAGRLSTRCPTDTSC--LYKSMLIR 169
CT +S C STA R C C LY S ++R
Sbjct: 195 CTRDLSPLTCAQCLSTAVSRFDQYCGAQQGCRILYSSCMVR 235
>01_06_0674 - 31090767-31091087
Length = 106
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 300 RPVWPCTASVSACRCTT-TPSTAAGRLSTRCPTD 202
RPV P A + CT +T+ GR+ +CPTD
Sbjct: 63 RPVPPGAAVMQLHACTRHVAATSLGRMMQQCPTD 96
>11_01_0127 +
1031690-1031952,1032850-1032857,1034679-1034927,
1034938-1035009,1036609-1036724,1037482-1037545,
1037742-1037773,1037804-1037850,1038627-1038660,
1039308-1039652,1040425-1040718,1040968-1041232,
1041359-1041480,1041754-1042059
Length = 738
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 249 WWCTGRRTRWPCRATPASTYSA-TSCSERASCKSAVGTTR 365
W TG + R + ST+S T C +A+C S GT R
Sbjct: 593 WEHTGHLSTCRLRPSRPSTFSVGTLCKRKATCPSIEGTKR 632
>02_02_0210 + 7873962-7874753
Length = 263
Score = 27.9 bits (59), Expect = 4.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 234 RRWRAWWCTGRRTR 275
R WR WWC+G +R
Sbjct: 50 RCWRRWWCSGATSR 63
>02_02_0209 + 7866348-7867139
Length = 263
Score = 27.9 bits (59), Expect = 4.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 234 RRWRAWWCTGRRTR 275
R WR WWC+G +R
Sbjct: 50 RCWRRWWCSGATSR 63
>12_02_0758 -
22858221-22858367,22859362-22859460,22859505-22859557,
22859674-22859728,22860204-22860284,22860779-22861213
Length = 289
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 312 HCMSRPVWPCTASVSACRCTTTPSTAA---GRLSTRCPTDTS 196
H S P+ C +AC TT+P +A GR S C T +S
Sbjct: 64 HYTSTPLTSCHTLPAACNGTTSPVLSAPPGGRTSLPCATISS 105
>07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319
Length = 249
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 321 KRLHCMSRPVWPCTASVSACRCTTTPSTAAGRLSTRCPTDTSCLYKSMLIRADRV--STI 148
+R C P + +CRC T P LST T T L+ S I + +T
Sbjct: 11 RRPPCRRGPAAVAPPARFSCRCGTHPVPRRNVLSTMLSTSTVILFGSKQITLAEITGATF 70
Query: 147 RSY 139
R Y
Sbjct: 71 REY 73
>01_01_0264 - 2139865-2140036,2140443-2140499,2140940-2141091
Length = 126
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 243 STAAGRLSTRCPTDTSCLYKSMLIRADRVSTIRSYRARSFADI 115
S G ST P++ LY+S + +S I SYR RS I
Sbjct: 14 SNCPGNKSTLIPSNMCDLYQSRGEKYTEISEISSYRFRSTISI 56
>10_01_0301 - 3319562-3320008
Length = 148
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +3
Query: 228 SPRRWRA-----WWCTGRRTRWPCRATPASTYSATSCSERASCKSAVGTTRASA 374
SPR RA WWC RT W A + ERA S + ASA
Sbjct: 64 SPRHPRALRRIWWWCRSSRTAWCADADTDTDAEVEVEVERAVLLSLLPNITASA 117
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = -3
Query: 339 SLHVRNKRLHCMSRPVWPCTASVSACRCTTTP-----STAAGRLSTRCPTDT 199
+LH+R + L + P +PC++S + C+ S+A R T P D+
Sbjct: 58 ALHLRRRELKLLPFPSFPCSSSSAPNTCSQQSHLLLVSSAGPREQTLLPADS 109
>04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743
Length = 105
Score = 26.6 bits (56), Expect = 9.8
Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 342 CSLHVRNKRLHCMSRPVWPCTASVSACRCTTTPSTAAGRLST--RCPTD 202
CS H KR C SR C SACRC P+ AG T RC TD
Sbjct: 54 CSEHSHKKR--C-SRS---CLTCCSACRC--VPAGTAGNRETCGRCYTD 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,034
Number of Sequences: 37544
Number of extensions: 217171
Number of successful extensions: 863
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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