Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D17
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   6.5  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   6.5  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   6.5  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   8.6  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 257 EIDDVILSIYC-HLSRYRLFVENQSFTVTGAVETSVAFIFRLGYN 126
           + +D   S YC H+  +R +V+  S+   G+       + +LGYN
Sbjct: 393 DAEDEYKSSYCSHMDAFR-WVKRDSYLPQGSQGLKAVTVSKLGYN 436


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 288 TAGFDLDDIRFKI--IPDIGFSFARSVNQHNGDVYIGG 395
           T GF +  I FK+  IPD+G+ +  S +   G+V+I G
Sbjct: 462 TVGFPIPSIEFKLVDIPDLGY-YTDS-SPPRGEVWIRG 497


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 249 VYFHYEDSQ---SVDFTAGFDLDDIRFKIIPDIGFSFARSVNQHNGDVY 386
           V FHY+      SV +     + DIR    PD     ARSV+ H+G ++
Sbjct: 240 VRFHYKHQDLLASVSYDQYLHVHDIRR---PDASTKPARSVHAHSGPIH 285


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 RFKIIPDIGFSFARSVNQHNGDVYIGGAHGIFK 413
           R+ II D GF FA++  Q  G   +G  H + K
Sbjct: 584 RYNIILDPGFGFAKTPKQSAG--LLGRLHELMK 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,878
Number of Sequences: 5004
Number of extensions: 38176
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)