Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D17
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498...    29   1.6  
10_08_0373 - 17286104-17288839                                         28   3.7  
06_03_0405 - 20464701-20466287                                         27   6.5  
03_06_0736 + 35861265-35862047                                         27   6.5  
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012     27   6.5  
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089...    27   8.7  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    27   8.7  

>05_06_0120 +
           25748882-25749297,25749411-25749600,25749682-25749888,
           25750234-25750401,25751155-25751390,25751617-25751764
          Length = 454

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 315 RFKIIPDIGFSFARSVNQHNGDVYIGGAHG-----IFKYSIVDN 431
           R  I+ D GFSF       +G +Y+G A G     +F Y+ +DN
Sbjct: 346 RMSILEDTGFSFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDN 389


>10_08_0373 - 17286104-17288839
          Length = 911

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 430 LSTMLYLKIPCAPPM*TSPLC*LTLRAKEKPISG 329
           ++TML L +P +PP   SP C L  RA+   + G
Sbjct: 1   MATMLPLLLPPSPPRALSPRCSLQPRARHHLLDG 34


>06_03_0405 - 20464701-20466287
          Length = 528

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 209 RLFVENQSFTVTGAVETSVAFIFRLGYNYNCQY-NYWSND 93
           +LF++     ++   E++  F  R G  YN QY  YW+ D
Sbjct: 398 QLFIDPYGAKISRIHESATPFPHREGVLYNIQYITYWNGD 437


>03_06_0736 + 35861265-35862047
          Length = 260

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 394 VHMEFLNTALLITRQRSLLYTIKT 465
           V  +F+N+ALL+ R+ SL YT  T
Sbjct: 102 VRFQFMNSALLLDRRVSLTYTHST 125


>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
          Length = 890

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 234 RKNNIVYFHYEDSQSVDFTAGFDLDDIRFKIIPDIGFSFARSVNQHNGDVYI 389
           +  N+VY  YED+      + FD++ I      D+GF  A   ++   D Y+
Sbjct: 99  KPQNVVYATYEDNSDEPSISDFDINVIEL----DVGFVIAIEEDEFEIDKYL 146


>04_03_0057 +
           10407402-10407452,10407540-10407782,10408506-10408976,
           10409058-10409483,10409559-10409618,10409694-10409807,
           10409888-10409956
          Length = 477

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 225 AIDRKNNIVYFHYEDSQSVDFTAGFDLDDI 314
           A  +K+  V+F YEDS ++D  A F  +D+
Sbjct: 95  ASKQKDARVWFPYEDSVNLDLPADFRFEDL 124


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 229 IAICPDIGCLSKTRALL*QAPS-KQALHL 146
           IAIC ++ CLS  + +L   PS  +ALH+
Sbjct: 66  IAICDEVACLSVAKLILRSWPSHHRALHV 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,459
Number of Sequences: 37544
Number of extensions: 211659
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)