Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D17
(506 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087081-12|AAK66039.2| 324|Caenorhabditis elegans Hypothetical... 30 0.84
Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z99283-3|CAB16538.1| 327|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 28 4.5
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 27 7.8
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 27 7.8
Z67735-3|CAA91531.3| 513|Caenorhabditis elegans Hypothetical pr... 27 7.8
U23176-5|AAX88833.1| 241|Caenorhabditis elegans Hypothetical pr... 27 7.8
>AC087081-12|AAK66039.2| 324|Caenorhabditis elegans Hypothetical
protein Y82E9BL.17 protein.
Length = 324
Score = 30.3 bits (65), Expect = 0.84
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -1
Query: 179 VTGAVETSVAFIFRLGYNYNCQYNYWSND---FPLRIHF 72
+TG ++T VA +F+ Y Y+ + +SND F ++ H+
Sbjct: 278 ITGLIQTEVARVFKSDYVYSSEEYEYSNDMNKFTIKCHY 316
>Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical
protein R10E11.7 protein.
Length = 319
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 334 ISVSLSLGVSINIMETST*VVHMEFLNTALLITRQRSLLYTIKTIW 471
I +S+GV+ N + ++ M A++++ Q S L+T IW
Sbjct: 83 IGAMISVGVTFNYLHPMLTLILMTINRIAVVVSMQASQLFTSSKIW 128
>Z99283-3|CAB16538.1| 327|Caenorhabditis elegans Hypothetical
protein Y70C5C.4 protein.
Length = 327
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 MEFLNTALLITRQRSLLYTIKTIW-HLQFRD 489
M F+N ALLI + L+ T+ T+W H +R+
Sbjct: 272 MIFINIALLILQCHGLVSTLTTLWVHKPYRE 302
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 390 GGAHGIFKYSIVDNKTT 440
GG HG+ KYSI D ++T
Sbjct: 2471 GGVHGVVKYSISDRQST 2487
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 243 NIVYFHYEDSQSVDFTAGFDLDDIRFKIIPDIGFSFARSVNQHNGD 380
N VYF + SQ + F +L I+ ++P I F S +H D
Sbjct: 148 NKVYFCNKKSQEIPFEISTELILIQKPVVPKITSFFYASATKHRVD 193
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 243 NIVYFHYEDSQSVDFTAGFDLDDIRFKIIPDIGFSFARSVNQHNGD 380
N VYF + SQ + F +L I+ ++P I F S +H D
Sbjct: 146 NKVYFCNKKSQEIPFEISTELILIQKPVVPKITSFFYASATKHRVD 191
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 243 NIVYFHYEDSQSVDFTAGFDLDDIRFKIIPDIGFSFARSVNQHNGD 380
N VYF + SQ + F +L I+ ++P I F S +H D
Sbjct: 148 NKVYFCNKKSQEIPFEISTELILIQKPVVPKITSFFYASATKHRVD 193
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 243 NIVYFHYEDSQSVDFTAGFDLDDIRFKIIPDIGFSFARSVNQHNGD 380
N VYF + SQ + F +L I+ ++P I F S +H D
Sbjct: 146 NKVYFCNKKSQEIPFEISTELILIQKPVVPKITSFFYASATKHRVD 191
>Z67735-3|CAA91531.3| 513|Caenorhabditis elegans Hypothetical
protein C15A7.2 protein.
Length = 513
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 333 DIGFSFARSVNQHNGDVYIGGAHGIFKYSIVDNKT 437
D+GF R+ ++NG+ G HG+ + ++ + T
Sbjct: 454 DVGFDPQRAYAENNGNQTNDGMHGVIELTVTNMNT 488
>U23176-5|AAX88833.1| 241|Caenorhabditis elegans Hypothetical
protein F21H12.7 protein.
Length = 241
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 69 LKHCHSFVVNSTFNY 25
L+HCHS V+N NY
Sbjct: 93 LRHCHSDVINDCLNY 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,307
Number of Sequences: 27780
Number of extensions: 211391
Number of successful extensions: 521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -