Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D15
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    27   2.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   2.6  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    26   3.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.5  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    26   4.6  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   8.0  

>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 338 LAPGILYVQVRLVRSRPFSSYTNRSVVHNPRPITKAP 228
           L+PG   +   ++RS PF  Y+ + VV +P   +  P
Sbjct: 241 LSPGAYSIITGMLRSDPFKRYSVKHVVQHPWLTSSTP 277


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 194 LTPVSSNRSTLDTM*VPVRTSSSISVAHTAYTS*ST 87
           LT   SN + +DT+ VP  T+   +   T YT  +T
Sbjct: 296 LTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGSTT 331



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 194 LTPVSSNRSTLDTM*VPVRTSSSISVAHTAYTS*ST 87
           LT   SN + +DT+ VP  T+   +   T YT  +T
Sbjct: 374 LTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGSTT 409



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 194 LTPVSSNRSTLDTM*VPVRTSSSISVAHTAYTS*ST 87
           LT   SN + +DT+ VP  T+   +   T YT  +T
Sbjct: 608 LTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGSTT 643



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 194 LTPVSSNRSTLDTM*VPVRTSSSISVAHTAYTS*ST 87
           LT   SN + +DT+ VP  T+   +   T YT  +T
Sbjct: 218 LTGTPSNGTVIDTVEVPTTTNYGYTTITTGYTGSTT 253



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 194 LTPVSSNRSTLDTM*VPVRTSSSISVAHTAYTS*ST 87
           LT   SN + +DT+ VP  T+   +   T YT  +T
Sbjct: 530 LTGAPSNGTVIDTVEVPTTTNYGYTTITTGYTGSTT 565



 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 194 LTPVSSNRSTLDTM*VPVRTSSSISVAHTAYTS*ST 87
           LT   SN + +DT+ +P  T+   +   T YT  +T
Sbjct: 452 LTGAPSNGTVIDTVEIPTTTNYGYTTITTGYTGSTT 487


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 243 HYESAFNLTNVDFWTHADSGIF*QINPRHDVSSSKNVQFDFRSAYCVHV 97
           HY  ++NL N    T A + ++    P   V++SKN+     S   V V
Sbjct: 376 HYSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKNLSQPILSITSVDV 424


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 421 EPSLTLAVVVTFALHEAILEGRKEFGYKDTEWLHIDTPYSVENIL 555
           +   +L+  V FA  E I +   E  +   + LHI  P+S+++IL
Sbjct: 617 DTGFSLSESVPFATKEWIQDMHAENSFNMYKNLHISAPFSLDHIL 661


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 378 VTPKRDSEVHWYIFSSRYFVCPSTISQEPAVFIVHQPLCGP*PKAHYESA 229
           ++P +  EVH +I SSRY        +  AV I++ P  G  PK   E A
Sbjct: 1   MSPHKIPEVHRHIMSSRYM-------EGNAVSIINMPFSGGQPKDGAELA 43


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 94  YDVYAVCATEIELDVLTGTHIVSRVDLLEDTGVSMSPEIDIGQI 225
           YD+Y V  TE+ + V TG  I ++  L +    +    + +G I
Sbjct: 148 YDIYFVFGTEVMVTVATGIDIPAKYVLPQFKNPTRLSMLGLGDI 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,628
Number of Sequences: 5004
Number of extensions: 54566
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)