Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D15
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr... 128 4e-30
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 115 3e-26
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 112 2e-25
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 31 0.78
AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical ... 30 1.0
Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear recep... 29 2.4
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 28 4.2
U28993-1|AAK31494.2| 242|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF016687-11|ABL01528.1| 646|Caenorhabditis elegans Hypothetical... 27 7.3
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 9.6
>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical protein
F55B11.1 protein.
Length = 1358
Score = 128 bits (308), Expect = 4e-30
Identities = 76/194 (39%), Positives = 100/194 (51%), Gaps = 11/194 (5%)
Frame = +1
Query: 4 TWEDKVKKAFNKGINLQAS-----------YMTSQRDGLVDYDVYAVCATEIELDVLTGT 150
TW+D VK A+ ++L AS + + L Y VY E+E+D LTG
Sbjct: 1139 TWDDWVKAAYVDRVSLSASGFGIIHHEPVDFFNGKGAELFGYSVYGTACCEVEIDCLTGD 1198
Query: 151 HIVSRVDLLEDTGVSMSPEIDIGQIEGAFVMGLGLWTTERLVYDENGRLLTNRTWTYKIP 330
H + R D++ D G S++P IDIGQIEGAF+ G GL+T E + +G LT YKIP
Sbjct: 1199 HHLLRTDIVMDVGESLNPAIDIGQIEGAFIQGYGLFTMEEIKIRPDGIRLTRGPGNYKIP 1258
Query: 331 GAKDIPVDFRISFRRNSPNPAGVLRSKATGEPSLTLAVVVTFALHEAILEGRKEFGYKDT 510
A D P F +S NS N G+ SKA GEP L L FA+ EA+ R + G D
Sbjct: 1259 SADDAPRHFNVSLLGNSSNKMGIFSSKAIGEPPLFLGSCAFFAIREAVRAYRIQNGNADY 1318
Query: 511 EWLHIDTPYSVENI 552
H +P + E I
Sbjct: 1319 FVFH--SPATPERI 1330
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 115 bits (276), Expect = 3e-26
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Frame = +1
Query: 7 WEDKVKKAFNKGINLQAS-YMTSQRD----GLVD--YDVYAVCATEIELDVLTGTHIVSR 165
WE +++A+ + LQ + Y T +R G ++ Y+ CA E+E+D LTG + V R
Sbjct: 1021 WEKSIREAYGAYVPLQCTEYGTVERAKFGVGEMESPYNTTGACAVEMEIDTLTGYNRVIR 1080
Query: 166 VDLLEDTGVSMSPEIDIGQIEGAFVMGLGLWTTERLVYDE-NGRLLTNRTWTYKIPGAKD 342
VD++ D G S++P +DIGQIEGAF+ G GL T E++ +++ G+L N YKIP A D
Sbjct: 1081 VDIVMDVGESLNPALDIGQIEGAFIQGYGLVTCEKITFNKTTGQLDQNTAGKYKIPKASD 1140
Query: 343 IPVDFRISFRR-NSPNPAGVLRSKATGEPSLTLAV-VVTFALHEAILEGRKEFGYKDTEW 516
+P DFR+ N+ N A V SK GEP L ++ V ++ I R E G E+
Sbjct: 1141 VPKDFRVKLLGINNANGAQVYSSKGIGEPPLMMSCGAVHSSIMNCIDNWRNENGIH--EF 1198
Query: 517 LHIDTPYSVENI 552
+ +P S E I
Sbjct: 1199 VDTISPLSAEKI 1210
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 112 bits (269), Expect = 2e-25
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 10/174 (5%)
Frame = +1
Query: 7 WEDKVKKAFNKGINLQAS-YMTSQRDGL------VDYDVYAVCATEIELDVLTGTHIVSR 165
WE ++ A+ + LQ + Y + R+ L Y+ CA E+E+D +TG + + R
Sbjct: 1031 WEKSIRDAYGAYVPLQCTEYGSVDREKLSIGEFEYPYNTTGACAVEMEVDTMTGYNRLLR 1090
Query: 166 VDLLEDTGVSMSPEIDIGQIEGAFVMGLGLWTTERLVYD-ENGRLLTNRTWTYKIPGAKD 342
VD++ D G S++P IDIGQIEGAF+ G GL T E++ ++ E G+L N YKIP + D
Sbjct: 1091 VDIVMDVGESLNPAIDIGQIEGAFMQGYGLVTCEKITFNKETGQLNQNSAGQYKIPKSSD 1150
Query: 343 IPVDFRISFRR-NSPNPAGVLRSKATGEPSLTLAV-VVTFALHEAILEGRKEFG 498
+P DFR+ N N A V SK GEP L ++ V + I + RKE G
Sbjct: 1151 VPKDFRVKLLGINKANGAKVYSSKGIGEPPLMMSCGAVHSCIMNCIDDWRKENG 1204
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 30.7 bits (66), Expect = 0.78
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 2/139 (1%)
Frame = -1
Query: 491 SFLPSNMASCKAKVTTTAKVNDGSPVALDLNTPAGLGELRLNEILKSTGIS-LAPGILYV 315
+F P S + TT +PV NTP + + G S AP L
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTT 527
Query: 314 QVRLVRSRPFSSYTNRSVVHNPRPITKAPSI*PMSISGLMLTPVSSNRSTLDTM*VPVRT 135
P SS T + NP T AP++ P++ + T +S +T T +T
Sbjct: 528 PTT-APVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTT--TPTTTTSTTTTTTTTTTTTQT 584
Query: 134 SSSISVAHTAYT-S*STRP 81
+ + V T T + +TRP
Sbjct: 585 TPTTPVVTTPSTITPTTRP 603
>AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical
protein Y51A2D.12 protein.
Length = 334
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 427 SLTLAVVVTFALHEAILEGRKEFGYKDTEWLHIDTPYSVENI 552
S+ L + F H IL+ R FGY T +IDT Y NI
Sbjct: 142 SMFLIPFIFFTRH--ILQNRSFFGYSSTANFYIDTTYGRSNI 181
>Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical
protein F32B6.1 protein.
Length = 492
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 TYKIPGAKDIPVDFRISFRRNSPNPAGVLRSKAT--GEPSLTLAVVVTFALHEAILEGRK 489
T + G +I DF + +P P G+L K P L V + F++H A+L+ +
Sbjct: 169 TTQTDGKLEINDDFDFENMQQNPTPPGLLPLKIERISTPPSDLPVPMDFSIHSAVLDIEQ 228
Query: 490 EFGY 501
+ Y
Sbjct: 229 KVFY 232
>AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear receptor
NHR-4 protein.
Length = 492
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 TYKIPGAKDIPVDFRISFRRNSPNPAGVLRSKAT--GEPSLTLAVVVTFALHEAILEGRK 489
T + G +I DF + +P P G+L K P L V + F++H A+L+ +
Sbjct: 169 TTQTDGKLEINDDFDFENMQQNPTPPGLLPLKIERISTPPSDLPVPMDFSIHSAVLDIEQ 228
Query: 490 EFGY 501
+ Y
Sbjct: 229 KVFY 232
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 535 MEYRCVAIRYPYNQIPSFLPIWL 467
M +R VA R+P + +F+PIW+
Sbjct: 672 MSFREVAARWPEFNVTTFMPIWM 694
>U28993-1|AAK31494.2| 242|Caenorhabditis elegans Hypothetical
protein F22D3.4 protein.
Length = 242
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 563 WLLSIFSTLYGVSMCSHSVSL*PNSFLPSNMASCKAKVTTTAKVNDGSP 417
+L ++FS Y C H L P F P K + A V +G+P
Sbjct: 57 YLEALFSKSYYKRECEHETRLEPVYFYPGENVKIKCYMCNLALVFNGNP 105
>AF016687-11|ABL01528.1| 646|Caenorhabditis elegans Hypothetical
protein T21D12.7 protein.
Length = 646
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = -1
Query: 557 LSIFSTLYGVSMCSHSVSL*PNSFLPSNMASCKAKVTTTAKVNDGSPVALDLNTP 393
+SIFS G S S P + L SN SC A+ + TA + DGS + TP
Sbjct: 489 VSIFSCPDGASPFLDPNSGQPATCLASNPFSCPAEHSCTA-LMDGSTACCPIQTP 542
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.1 bits (57), Expect = 9.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 37 KGINLQASYMTSQRDGLVDYDVYAVCATEIELDVLTGTHIVSRVD-LLEDTGVSMSPEID 213
KGI+L Y+TS G D+Y+ +I L + R+D ++ GV I+
Sbjct: 7361 KGISLARGYITSAPHGTPFSDIYS--TGDIVDSKLNSLQYIGRMDSQVKCKGV----RIN 7414
Query: 214 IGQIEGAFVMGLGL 255
I +IE ++ LGL
Sbjct: 7415 ISEIEKELILCLGL 7428
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.136 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,752
Number of Sequences: 27780
Number of extensions: 296930
Number of successful extensions: 753
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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