Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D14
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    30   0.21 
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   2.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.5  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   5.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
 Frame = +2

Query: 71  LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV---------CT 223
           L++  KRLSG + +A +   D         N+Y T+   E +  I+ ++         C 
Sbjct: 34  LLSMDKRLSGLEASAGILRDDVTNYNRVSSNIYDTLKEMESLQVIHSHLPVLQKGLQECQ 93

Query: 224 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 337
             N +V + +  V   +K + +D +  +G P+ Q+ SK
Sbjct: 94  NLNKSVSQNLKSVMDILKSLAEDYTSLEGSPL-QFASK 130


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 80  WKKR--LSGADPNADVTDFDRRITAGPDGN 163
           WK+   ++  +PNA +T F+R   +  DGN
Sbjct: 458 WKRTDDIASGEPNAILTSFNRNFRSRNDGN 487


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 77   TWKKRLSGADPNADV 121
            TW+KRL G   N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/62 (20%), Positives = 26/62 (41%)
 Frame = +2

Query: 215 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMSGSN 394
           +C   NAA       ++  IKG    + G+   P  ++ +    + + + T I+  S   
Sbjct: 22  ICFETNAATSPRSFQIQLRIKGYAVYHHGFLSSPSHKHPTTASASDSDEATEIFTHSQPL 81

Query: 395 PL 400
           P+
Sbjct: 82  PI 83


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 194 VSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA---GDV 364
           +S I     +  ++AVD  V   +Y + G T+ NS    +   +++SK  + K    GD 
Sbjct: 586 ISSIDSIPDSFSDSAVDLPVDSSKYTLVGKTQSNSNLLQDNAEKHISKSNLEKVDVKGDT 645

Query: 365 TMIYCMSGSNPLA 403
           +      G  P A
Sbjct: 646 SPNSVEQGIEPQA 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,728
Number of Sequences: 5004
Number of extensions: 35297
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)