Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D14
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288...    29   1.5  
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    29   2.0  
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684...    29   2.6  
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629...    29   2.6  
01_03_0269 + 14442886-14442978,14443306-14443377,14443551-144440...    29   2.6  
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277...    28   4.5  

>02_01_0397 -
           2877242-2878479,2878557-2878861,2879862-2880549,
           2881998-2882016
          Length = 749

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 383 SGSNPLAHPNYFKNGKDVNGK 445
           SGS P   P Y +NGKD++G+
Sbjct: 597 SGSIPPTAPRYMENGKDISGR 617


>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 263 EYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMSGSNP 397
           E+  KG+TK  +  +G+P PQ+ S+D M      T IY M    P
Sbjct: 16  EFMQKGITKLKNILEGKPEPQFSSEDYMML---YTTIYNMCTQKP 57


>02_05_0854 -
           32267047-32267298,32267383-32268194,32268289-32268421,
           32268530-32268619
          Length = 428

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 53  NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 169
           NA+ + L+ W  R+ GA+ NA   DF  +  +    +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELW 286


>02_05_0853 +
           32261705-32261794,32261895-32262027,32262117-32262928,
           32263020-32263271
          Length = 428

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 53  NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 169
           NA+ + L+ W  R+ GA+ NA   DF  +  +    +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATTFDFTTKGILNVAVEGELW 286


>01_03_0269 +
           14442886-14442978,14443306-14443377,14443551-14444045,
           14444134-14444253
          Length = 259

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 53  NAYPKPLITWKKRLSGADPNADVTDF 130
           NA+ + L+ W  R+ GA+ NA   DF
Sbjct: 123 NAHRQELVNWVNRVGGANSNATAFDF 148


>05_01_0355 -
           2774217-2774318,2774608-2774775,2774872-2775090,
           2775176-2775319,2775485-2775767,2775874-2775929,
           2776012-2776161,2776254-2776340,2776414-2776449,
           2777100-2777162,2777247-2777327,2777407-2777496,
           2777690-2777767,2777855-2778058,2778139-2778186,
           2778262-2778447,2779879-2779978,2780121-2780260
          Length = 744

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 275 KGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMSGSNP 397
           KG+TK  +  +G+P PQ+ S+D M      T IY M    P
Sbjct: 20  KGITKLKNILEGKPEPQFSSEDYMML---YTTIYNMCTQKP 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,555
Number of Sequences: 37544
Number of extensions: 236749
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)