Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D14
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              31   0.006
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 31.1 bits (67), Expect = 0.006
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 2   EKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSGADPNADVTD--FDRRITAGPDGNLYFT 175
           +K   +G   +++C + + +PKP +TWKK  +  D   D TD        +  DG L   
Sbjct: 687 DKAFAQGSDARVEC-KADGFPKPQVTWKK--AAGDTPGDYTDLKLSNPDISVEDGTLSIN 743

Query: 176 IVTKEDVSDIYKYVCTAKN 232
            + K   ++ Y Y+C A N
Sbjct: 744 NIQK--TNEGY-YLCEAVN 759



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 209 KYVCTAKNAA 238
           +YVCTA+NAA
Sbjct: 655 EYVCTAENAA 664


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 152 PDGNLYFTIVTKEDVSDIYKYVCTAKN 232
           PDG +    ++  + SD   Y C A N
Sbjct: 865 PDGVIAQLQISSAEASDSGAYFCQASN 891


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 152 PDGNLYFTIVTKEDVSDIYKYVCTAKN 232
           PDG +    ++  + SD   Y C A N
Sbjct: 861 PDGVIAQLQISSAEASDSGAYFCQASN 887


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,743
Number of Sequences: 438
Number of extensions: 2510
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)