Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D13
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 130 6e-31
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 67 8e-12
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 43 1e-04
07_01_0057 + 431084-431105,431149-431297,431380-431526,431622-43... 31 0.84
08_01_0448 - 3960134-3960382,3960634-3960694,3961168-3961264,396... 29 1.9
03_05_0683 - 26703486-26703539,26703639-26703797 28 4.5
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 28 5.9
12_02_0489 - 19619623-19619748,19619850-19620165,19620487-196207... 27 7.8
03_02_0577 - 9590096-9590432,9590680-9590750,9590890-9590983,959... 27 7.8
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 130 bits (315), Expect = 6e-31
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Frame = +3
Query: 3 YSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEPATTK 182
Y+R D+K + R ITAKL ANL++ AG+D VI D+H++Q G+F+IPVD+++ +P
Sbjct: 180 YARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILD 239
Query: 183 WIQENIPEWKSSVMVSPDAGGVKRMTAIADRL-DIDFAIIHKERKRADERDTTVLVGNVK 359
++ K V+VSPD GGV R A A +L D AI+ K R+ + + L+G+VK
Sbjct: 240 YLASKTIS-KDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVK 298
Query: 360 NRTAIMVDDLADTCDTIVKGAEALREAGASKIYAIIDPRSFS 485
+ AIMVDD+ DT TI A L++ GA +YA FS
Sbjct: 299 GKVAIMVDDMIDTAGTITSAAALLKQEGAEAVYACSTHAVFS 340
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 469 THGVLAGNAIEKINSSCLEAIVVTNTIPQDKH 564
TH V + AIE+++ E ++VTN+I +H
Sbjct: 335 THAVFSPPAIERLSGGIFEEVIVTNSILLPEH 366
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 67.3 bits (157), Expect = 8e-12
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +3
Query: 3 YSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAE 167
Y+R D+K + R I AKL+AN+I+ AGA+ V+ DLH+SQ G+F+IPVD++Y +
Sbjct: 144 YARADRKSQGRESIAAKLVANMITEAGANRVLVCDLHSSQAMGYFDIPVDHVYGQ 198
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 16/64 (25%)
Frame = +3
Query: 342 LVGNVKNRTAIMVDDLADTCD----------------TIVKGAEALREAGASKIYAIIDP 473
L+G+V+ + A+M+DD+ DT D TI KGAE L + GA ++YA
Sbjct: 202 LIGDVRGKVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTH 261
Query: 474 RSFS 485
FS
Sbjct: 262 AVFS 265
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 469 THGVLAGNAIEKINSSCLEAIVVTNTIP 552
TH V + AIE+++S + +++TNTIP
Sbjct: 260 THAVFSPPAIERLSSGLFQEVIITNTIP 287
>02_05_0511 +
29644266-29644399,29644502-29644913,29645007-29645075,
29645169-29645333,29645771-29645870,29645906-29646081
Length = 351
Score = 43.2 bits (97), Expect = 1e-04
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Frame = +3
Query: 15 DKKEKSRAPITAKLLANLISV-----AGADHVITIDLHASQIQGFFNIPVDNLYAE--PA 173
++ E+ TA LA ++S+ G V+ D+HA Q + +F V + P
Sbjct: 110 ERVEEEGDVATAFTLARILSMIPKSRGGPTSVVIYDIHALQERFYFGDDVLPCFETGIPL 169
Query: 174 TTKWIQENIPEWKSSVMVSPDAGGVKRMTAIADRLDI---------DFAIIHKERKRADE 326
+ +++ +P+ + + PD G KR + + D+ ++ + + D+
Sbjct: 170 LLQRLRQ-LPDADNITIAFPDDGAWKRFHKLLLNFPMTPSFYFGLFDYKVVCAKVREGDK 228
Query: 327 RDTTVLVGNVKNRTAIMVDDLADTCDTIVKGAEALREAGASKIYAIIDPRSFSRKRY 497
R + GN + R ++VDDL + T+ + + L GA+K+ A + F ++ Y
Sbjct: 229 RIVRIKEGNPEGRHVVIVDDLVQSGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSY 285
>07_01_0057 +
431084-431105,431149-431297,431380-431526,431622-431752,
431791-431894,432949-433128,433481-433581,434030-434185,
434679-434731,434818-434875,435162-435282,436010-436215
Length = 475
Score = 30.7 bits (66), Expect = 0.84
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = +3
Query: 186 IQENIPEWKSSVMVSPDAGGVKRMTA---IADRLDIDFAIIHKERKRADERDTTVLVGNV 356
IQ I +S V+V+ G+ RMT + R D + DT VL+G+
Sbjct: 128 IQTPIGLKESKVLVTGSMNGIVRMTVGSFNSKRQDTYLPSFDVILRLHYFNDTLVLIGSG 187
Query: 357 KNRTAIMVDDLADTCDTIVKGAEALREAGASKIYAIIDPRSFSR 488
++ +I + DL+DT D + A G + I II SF+R
Sbjct: 188 ESGGSIHIMDLSDTIDVAMGSMNAY---GGNIIGNIIPVASFNR 228
>08_01_0448 -
3960134-3960382,3960634-3960694,3961168-3961264,
3963174-3963366
Length = 199
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 384 DLADTCDTIVKGAEALREAGASKIYAIIDP 473
D +CD+ V+G+ A RE GA + +A+ P
Sbjct: 115 DQQGSCDSRVRGSRARRETGAPRPFALAPP 144
>03_05_0683 - 26703486-26703539,26703639-26703797
Length = 70
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 358 KTERQSWLTIWLIHVIQSSKVQKH*EKLVQARFTQLLTHGVLAGNAIEKI 507
+ + QS IWLIH +QS K + LVQA T L+ +++ EKI
Sbjct: 23 RKKNQSKWNIWLIHSVQSEKKR---SCLVQA--TTLVPTNMISAGGAEKI 67
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 156 LYAEPATTKWIQENIPEWKSSVMVSPDA--GGVKRMTAIADRLDIDFAIIHKE 308
+Y +W+Q+N+ S ++++ DA G + A D+ ++F ++ +E
Sbjct: 733 MYGARPVRRWVQKNVMTKLSEMLITGDAGQGSTISIDATDDKKGLNFQVLKEE 785
>12_02_0489 -
19619623-19619748,19619850-19620165,19620487-19620747,
19621320-19621710,19622242-19622254
Length = 368
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 76 WLEQTM*SLSIYMRHKSKASSISQSTIFMLNRLLLNGYKKIFQNGNQVSWS 228
W+ S+ IY+ K SI + I + ++L+G +++ N N WS
Sbjct: 282 WISCCPASVKIYLNQAYKGISIYEDIITFVKNMILHGRQEL-MNANGGRWS 331
>03_02_0577 -
9590096-9590432,9590680-9590750,9590890-9590983,
9591070-9591137,9591230-9591296,9591436-9591566,
9591774-9591847,9592017-9592092,9594082-9594147,
9595432-9595498,9595785-9595861,9596701-9596806,
9596906-9596979,9597587-9597682,9597781-9597972,
9598051-9598200
Length = 581
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 413 DDCITCISQIVNHDCRSVFHVTNKNSCISLIGSLSLFMYNCKVY 282
D C TC ++++NH + V ++CI S+ F+ N K++
Sbjct: 374 DKCATCFAKLINHHLYA--RVEELSTCID---SIKTFVDNLKIF 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,714
Number of Sequences: 37544
Number of extensions: 273470
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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