Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D13
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   0.92 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.6  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 274 GWI*TLQLYIKREREPMSEI 333
           GW  TLQ ++K+ RE M+ I
Sbjct: 39  GWYQTLQTHMKKVREQMAGI 58


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 253 LLTPPASGETMTLDFHSGIFSCIHLVVAGS 164
           L+ PP   E    + H+ ++SC+    AGS
Sbjct: 60  LVFPPFRAEDYRQEVHAQVYSCLARSPAGS 89


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 312 KRADERDTTVLVGNVKNR-TAIMVDDLAD 395
           + AD +DT +L+GN +N  T  ++ D  D
Sbjct: 365 READFKDTEILIGNNENEGTYFILYDFND 393


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 312 KRADERDTTVLVGNVKNR-TAIMVDDLAD 395
           + AD +DT +L+GN +N  T  ++ D  D
Sbjct: 365 READFKDTEILIGNNENEGTYFILYDFND 393


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 133 SSISQSTIFMLNRLLLNGYKKIFQNGNQV 219
           SS+S S  +  N    N YKK++ N N +
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKKLYYNINYI 333


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 373 SWLTIWLIHVIQSSKV 420
           SW++ W+ H   S++V
Sbjct: 259 SWVSFWINHEATSARV 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,448
Number of Sequences: 438
Number of extensions: 3811
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)