Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D12
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   0.57 
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    27   0.99 
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    25   4.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   4.0  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    24   7.0  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    23   9.2  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 200 GTEVDATEDDAQMSNVIIHREGTSARH 280
           G+E+ A +DD+  +N+ I  EG S +H
Sbjct: 249 GSEIRARDDDSPTANIAIAVEGMSWKH 275


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 73  NDV*PVTWSIYIQGSLVPKFTVTVHIQETAMMY 171
           ND  P +W++Y Q    P +    H+ +  M Y
Sbjct: 9   NDA-PSSWALYFQDGASPSYLGVTHLNDYLMFY 40


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 216 PQKMTLKCQTLSFIEKAPLRVITYSPRFIRA 308
           P K  LK +T +      LRVI YS RFI++
Sbjct: 85  PSKQELKSETFNLDHVKILRVIEYS-RFIQS 114


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 280 MTRRGAFSMNDNV*HLSVIFCGVDFSSSSNFGHSQFR 170
           M R+G+F+  D    L  I CG+++    +  H   +
Sbjct: 99  MLRKGSFTEQDTAKFLWQILCGLEYCHKLHICHRDLK 135


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 ELRVPEIRTGTEVDATEDDAQM--SNVIIHREGTSARHYVLA 292
           E +VP I+ G  ++  E+ A+   S V++ R+G +  HY+LA
Sbjct: 41  EPQVPVIQYG--LNQLEEKARNLESKVLLTRDGDTKAHYLLA 80


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 247 YHS*RRHLCASLRTRHDL*EQERLMHVY 330
           +H+   HL +SLR++ DL +++ L+  Y
Sbjct: 822 FHAGETHLISSLRSKVDLLDRKFLIKEY 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,068
Number of Sequences: 5004
Number of extensions: 24459
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)