Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D12
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690...    30   0.39 
10_05_0050 + 8565612-8566523                                           28   1.6  
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468...    28   2.1  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    27   3.7  
04_04_0225 + 23745404-23747788                                         26   6.4  
06_01_0745 + 5570821-5571496,5572205-5572322,5572410-5572571,557...    26   8.5  

>04_01_0526 -
           6901003-6901056,6901070-6901404,6901423-6901607,
           6902201-6904641
          Length = 1004

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 90  HVVNLHPGFSCT*IHCYCTYSGNGNDVRNCECP 188
           H +    G      + YCT+ G  N + +C+CP
Sbjct: 298 HAIVSDVGSGVCGFNSYCTFDGTRNQIASCQCP 330


>10_05_0050 + 8565612-8566523
          Length = 303

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 108 PGFSCT*IHCYCTYSGNGNDVRNCEC 185
           PG++C  +H  C  S NG    NC+C
Sbjct: 262 PGYACVSVHSECVDSTNGPGY-NCKC 286


>02_01_0624 -
           4681834-4682298,4684250-4684398,4684479-4684557,
           4684827-4684925,4685004-4685081,4685231-4685288,
           4685814-4685913,4686000-4686008,4686105-4686138,
           4686729-4686911,4687099-4687126,4687268-4687380,
           4688253-4688459,4689212-4689511
          Length = 633

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 101 IDHVTGQTSLRWTSISSYGQI-EYYLESAYNIDS 3
           IDH TGQT+L W+++  + Q+ E  L+    +D+
Sbjct: 130 IDH-TGQTALHWSAVRGHIQVAELLLKEGAKVDA 162


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 101 IDHVTGQTSLRWTSISSYGQI-EYYLESAYNID 6
           +DH TGQT+L W+++  + Q+ E  L+    +D
Sbjct: 159 VDH-TGQTALHWSAVRGHIQVAELLLKEGAKVD 190


>04_04_0225 + 23745404-23747788
          Length = 794

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 138 YCTYSGNGNDVRNCECP 188
           YC+++ N N+   C+CP
Sbjct: 306 YCSFNWNQNETVECQCP 322


>06_01_0745 +
           5570821-5571496,5572205-5572322,5572410-5572571,
           5572650-5572681,5573406-5573584,5573697-5573897
          Length = 455

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 144 TYSGNGNDVRNCECPKLELELKSTPQKMTLKCQTL 248
           TY+    +   C C   +L+L  TP  +T  C ++
Sbjct: 246 TYALTAGNCVQCSCGPGDLKLYCTPASLTASCSSM 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,224
Number of Sequences: 37544
Number of extensions: 148609
Number of successful extensions: 329
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)