Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D12
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z66523-1|CAA91411.1|  361|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z49966-3|CAA90241.1|  361|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    25   10.0 

>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 170 TELRVPEIRTGTE-VDATEDDAQMSNVIIHREGTSA 274
           T+L++ E RT    +D  +  AQ   VIIH  GT++
Sbjct: 286 TQLQISEARTVFPCIDVPDMKAQFDTVIIHPTGTTS 321


>Z66523-1|CAA91411.1|  361|Caenorhabditis elegans Hypothetical
           protein M05D6.1 protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 165 DVRNCE-CPKLELELKSTPQKMTLK 236
           DV+ C+ CPK  LE+ +T +K+T K
Sbjct: 246 DVQLCKGCPKSFLEIATTLRKLTYK 270


>Z49966-3|CAA90241.1|  361|Caenorhabditis elegans Hypothetical
           protein F35C11.3 protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 165 DVRNCE-CPKLELELKSTPQKMTLK 236
           DV+ C+ CPK  LE+ +T +K+T K
Sbjct: 246 DVQLCKGCPKSFLEIATTLRKLTYK 270


>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 183 TRNSVHHCRFLNMYSNSEFRYKRTLDVN 100
           T+NS   C +   +SNS   Y   LD N
Sbjct: 483 TKNSADECDWRKNFSNSNRNYTLKLDTN 510


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,380,838
Number of Sequences: 27780
Number of extensions: 139214
Number of successful extensions: 327
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)