Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D11
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 131 5e-32
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 1.5
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi... 27 2.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.0
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 26 3.5
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 26 3.5
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 4.6
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 4.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.1
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 25 8.1
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 8.1
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 131 bits (317), Expect = 5e-32
Identities = 59/108 (54%), Positives = 75/108 (69%)
Frame = +1
Query: 133 VQTIEYVLGSVSHTASYLRLWALSVAHAQLAEVSWNMLVRKGLMSSDFQGGIFLCVVFAG 312
+ TIE+ LG VSHTASYLRLWALS+AH QL+ V WNM + G + G IF+ ++F
Sbjct: 695 IHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWNMTLANGFRMTGIVGSIFVVILFGF 754
Query: 313 WAAISVSILVLMEGLSAFLHTLRLHWVEFQSKFYGGEGYLFQPFSFEL 456
W + +LV MEG SA LH+LRLHWVE SK + GEGY F PF+F++
Sbjct: 755 WFIATCVVLVAMEGTSAMLHSLRLHWVEGMSKHFEGEGYAFTPFTFKV 802
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = -2
Query: 480 SLPGRVEYQLEGERLEEVTLTAVELALELDPMQSESVEESGEPLHQHEDGDGDGCPASEH 301
S+ G +E EGE L+ L ++ ALE + ++S S ++ +H+ + +
Sbjct: 661 SMVGYLEDMDEGEMLDANNLPEMQFALEQE-LESNSSDDDVVEVHRELSHNSSSNDEDDG 719
Query: 300 HTQEDTALEVGRHQTF 253
+ ++ + E+ R +F
Sbjct: 720 NDEDPLSREMSRRLSF 735
>SPBC21H7.07c |his5||imidazoleglycerol phosphate
dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 396 LDPMQSESVEESGEPLHQHEDGDGDGCPASEHHTQEDTALEVG 268
LD M + +G L + GD +HHT EDTA+ +G
Sbjct: 59 LDHMYHALAKHAGWSLRLYSRGD---LIIDDHHTAEDTAIALG 98
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 376 LRLHWVEFQSKFYGGEGYLFQPFSFELILDSAGQ 477
L+LHW + K Y + +F F L+ SAGQ
Sbjct: 844 LKLHWSKSAIKKYETKASIFNELLFCLVYISAGQ 877
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 376 LRLHWVEFQSKFYGGEGYLFQPFSFELILDSAGQ 477
L+LHW + K Y + +F F L+ SAGQ
Sbjct: 844 LKLHWSKSAIKKYETKASIFNELLFCLVYISAGQ 877
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 378 ESVEESGEPLHQHEDGDGDGCPASEHHTQED 286
E +E+S + DG P S +H QE+
Sbjct: 513 EGIEDSSNDISSTTSSDGRAKPESSYHDQEE 543
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 3.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 145 EYVLGSVSHTASYL--RLWALSVAHAQLAEVSWNMLVRKGLMSSDFQGGIFLCVVFAGWA 318
+YV G + T SY+ + WA A + WN+ K + S G +VF G A
Sbjct: 71 KYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEA 130
Query: 319 AI 324
++
Sbjct: 131 SL 132
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 223 AEVSWNMLVRKGLMSSDFQGGIFL 294
A WN+++ K ++S+D Q IFL
Sbjct: 356 AVYDWNVIIDKIIVSNDQQSSIFL 379
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -2
Query: 399 ELDPMQSESVEES--GEPLHQHEDGDGDG 319
E D M+ E EE E + +DGDGDG
Sbjct: 182 EADEMEEEFDEEGEGDEEEEEEDDGDGDG 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = -2
Query: 381 SESVEESGEPLHQHEDGDGDGCPASEHHTQEDTALEVGRH 262
S +SGE H H +G D +D+ + RH
Sbjct: 1298 SRKSSKSGEHHHHHNEGHADSSSTRTSLAHQDSRKSLHRH 1337
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 8.1
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 188 RRYEAVCDTLPSTYSIVCTALVDEDLCDVIIVIRGCRHWRSARGPVLGGALDRLVTLSRP 9
+R EA+ L Y + + V + ++VI+ CR R + + AL ++V L+R
Sbjct: 281 KRREAIQGVLDMIYDALLSVTVQAPDYETLMVIQACR--RLYKPAHIQFALPKVVDLNRK 338
Query: 8 L 6
L
Sbjct: 339 L 339
>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 144
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 237 EHAGQERFDVVRLPRRYLPVCGVRWLGSHL 326
E++GQ+ +V+R Y V VRW G L
Sbjct: 92 EYSGQKLLNVLRKEDVYGMVVCVRWYGGQL 121
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 362 AESPSISTRMETEMAAQPANTTHRKIPP 279
+ S S S++ E E AA+P+++T IPP
Sbjct: 297 SSSSSFSSKRE-EAAAEPSSSTATDIPP 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,644
Number of Sequences: 5004
Number of extensions: 45128
Number of successful extensions: 126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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